Lecture 34 of 40Week 7
The Cancer Genome Atlas (TCGA)
Prof. Nagarjun Vijay · IISER Bhopal
Credits and licence
- From
- Advances in Omics, IISER Bhopal (at NPTEL)
- Licence
- CC BY-NC-SA, as NPTEL states it. Non-commercial use only.
- Attribution
- NPTEL states: "Distributed under Creative Commons Attribution-ShareAlike / CC BY - NC - SA", beside a BY-NC-SA badge. Coordinated by IIT Madras.
- Who can watch
- Teens profiles and older. How courses are placed
All the lectures
- Introduction to Genomics - 1
- Introduction to Genomics - 2
- Advent of NGS
- Genome Assembly: Few Concepts and Terminology
- Genome Assembly Approaches
- Pyrosequencing
- Reversible Chain Termination Based Sequencing
- Ph Sequencing
- Sequencing by Ligation (Solid)
- Sequencing by Ligation (Complete Genomics)
- Other Short-Read Sequencing Technologies - Part-1
- Other Short-Read Sequencing Technologies - Part-2
- Long-Read Sequencing
- Single Molecule Long-Read Sequencing
- The Omics Data Avalanche
- Evolutionary Biology & Genomics
- Ancient Genomics
- Whole-Genome Duplication
- Tests of Selection
- Genomics in Experimental Evolution
- Making Sense of Genomic Sequences
- Transcriptomics: New Tools Leading to Deeper Insights
- Single Cell Transcriptomics and Beyond
- Proteomics: A Brief Introduction
- Protein Quantification
- Introduction to Linux for Omics
- The Linux Command Line Interface
- Using the CLI-1:NCBI Datasets
- Using the CLI-2: Short Read Archive Toolkit
- UCSC and IGV genome browsers
- Mega Omics Projects
- Genotype-Tissue Expression (GTEx)
- Encyclopedia of DNA Element (ENCODE)
- The Cancer Genome Atlas (TCGA)
- Eukaryotic Genome Sequencing Consortia
- The Postomics Era
- RNA-Seq Differential Expression Analysis
- Gene Loss & its Consequences
- Establishing Gene loss: Few Examples
- Course Summary