Learn · Algorithms for protein modelling and engineering
Lecture 23 of 62week-05
Lecture 23: Replica Exchange Monte Carlo (REMC)
Prof. Pralay Mitra · IIT Kharagpur
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- Algorithms for protein modelling and engineering, IIT Kharagpur (at NPTEL)
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All the lectures
- Lecture 01: Introduction on Proteins
- Lecture 02: Introduction on Proteins (Contd.) and Sequence Database
- Lecture 03: Protein Data Bank
- Lecture 04: PDB Parsing
- Lecture 05: Molecular Visualization Tools
- Lecture 06: Representation and Data Structure
- Lecture 07: Digitization of a Molecule
- Lecture 08: Application to Protein Docking, FFT
- Lecture 09: Implementation Details
- Lecture 10: Hashing
- Lecture 11: Geometric Hashing
- Lecture 12: Geometric Hashing (Contd.)
- Lecture 13: Geometric Hashing (Contd.)
- Lecture 14: Molecular Surface
- Lecture 15: Genetic Algorithm (GA) for Surface Comparison
- Lecture 16: Monte Carlo (MC) Method
- Lecture 17: Monte Carlo Method (Contd.) and Random Number
- Lecture 18: Monte Carlo (MC) Method (Contd.)
- Lecture 19: Protein Folding
- Lecture 20: Protein Folding (Contd.) and Protein Design
- Lecture 21: Protein Energy Landscape
- Lecture 22: Protein Energy Landscape (Contd.), Limitation of MC
- Lecture 23: Replica Exchange Monte Carlo (REMC)
- Lecture 24: Ab Initio Protein Folding
- Lecture 25: Structure Alignment Measures
- Lecture 26: Dynamic Programming
- Lecture 27: Dynamic Programming (Contd.), Sequence Alignment
- Lecture 28: Dynamic Programming (Contd.), Position Specific Scoring Matrix (PSSM)
- Lecture 29: Structure Alignment
- Lecture 30: Structure Alignment (Contd.)
- Lecture 31: Structural Classification of Proteins (SCOP)
- Lecture 32: SCOP (Contd.), Symmetry in Proteins
- Lecture 33: Symmetry in Proteins
- Lecture 34: Discriminating Biological Protein Interfaces from Crystal Artifacts
- Lecture 35: Discriminating Biological Protein Interfaces from Crystal Artifacts (Contd.)
- Lecture 36: Discriminating Biological Protein Interfaces from Crystal Artifacts (Contd.)
- Lecture 37: Discriminating Biological Protein Interfaces from Crystal Artifacts (Contd.)
- Lecture 38: Symmetry-Based Protein Complex Modeling
- Lecture 39: Some Protein Docking Methods
- Lecture 40: Some Protein Docking Methods (Contd.)
- Lecture 41: Computational Protein Design (CPD)
- Lecture 42: Computational Protein Design (CPD) (Contd.)
- Lecture 43: Protein Design Energy Function
- Lecture 44: Protein Design Analysis
- Lecture 45: Application of Protein Design on Drug Design
- Lecture 46: RECM in Protein Design
- Lecture 47: Application of Protein Design on Drug Design
- Lecture 48: Application of Protein Design on Drug Design (Contd.), Protein Modification
- Lecture 49: Protein Modification (Contd.)
- Lecture 50: Protein Modification (Contd.)
- Lecture 51: Assigning Secondary Structure to Protein Sequence
- Lecture 52: Assigning Secondary Structure to Protein Sequence (Contd.)
- Lecture 53: Machine Learning to Predict the Secondary Structure from Amino Acid Sequences
- Lecture 54: Machine Learning to Predict the Secondary Structure from Amino Acid Sequences (Contd.)
- Lecture 55: Post Translational Modification
- Lecture 56: Predicting Protein Phosphorylation Sites
- Lecture 57: Predicting Protein Phosphorylation Sites (Contd.)
- Lecture 58: Summarizing Protein Folding and Protein Docking
- Lecture 59: Summarizing Protein Folding and Protein Docking (Contd.)
- Lecture 60: Summarizing Potein Engineering
- Live Session 09-08-2021
- Live Session 06-10-2021