About
This talk will cover two areas of current research in the context of knowledge sharing between CERN openlab and the life science communities. The first area covers the development and prototyping of a multi-science data analysis platform build up around CERN developed technologies like, Zenodo, REANA and CVMFS. When finished this platform will support a complete data analysis life-cycle from data discovery, to data access, to data processing to end-user data analysis. The second area covers a specific use case, where HEP specific software like ROOT is used to store and process genomics data sequences. There are a number of handcrafted genomics data formats being used, like FASTQ, SAM, BAM, CRAM, etc. They range from pure ASCII to compressed binary formats. We will compare the features of these formats with the generic capabilities of ROOT's TTree containers. Also we will show performance numbers of typical analysis scenarios..
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The talk
Credits and licence
- Institution
- CERN
- Department
- IT Technical Forum (ITTF)
- Taught by
- Taghi Aliyev, Fons Rademakers
- Year
- 2017
- Language
- English
- Subjects
- Mathematics
- Source
- CERN
- Licence
- CERN, as CERN states it. CERN's terms
- Attribution
- © CERN. CERN provides its audiovisual media free of charge for educational and informational use, credited to CERN; this lecture is shown in CERN's own player.
- Who can watch
- CERN gives no rating. Invisible Network shows it to Tweens profiles and older, judged from what the source says about it. How courses are placed