2.3: Organic nomenclature -alkanes

Organic Chemistry-Part 1 Fundamentals · LibreTexts

0%

Contents

    Text

    Size
    100%
    Theme
    Typeface
    Line length
    Spacing

    From LibreTexts, under Public Domain, as the source states it; its equations are written in TeX, which the PDF shows typeset. This page at LibreTexts.

    2.3: Organic nomenclature -alkanes

    Drawing Lewis structures, or line-bond structures, and describing delocalized electrons by resonance and resonance hybrid is a graphical way of representing organic molecules. Names are given to things to represent them in words. The same applies to organic molecules; they are assigned names to represent them in words. For example, ethanol is a molecule that has the following Lewis structure: \(\ce{H-\overset{\overset{\Huge{\ce{H}}}|}{\underset{\underset{\Huge{\ce{H}}}|}{C}}-\overset{\!\large\:\cdot\:\!\cdot}{\underset{\!\large\:\cdot\:\!\cdot}{O}}-H}\), or the following line bond structure: clipboard_e09f347238514d856db92a6a48580b093.png. Before systematic nomenclature was developed, organic compounds were known by common names. The International Union of Pure and Applied Chemistry (IUPAC) has developed a systematic nomenclature, called the IUPAC nomenclature or systematic nomenclature of organic compounds. Systematic names are assigned so that each organic molecule has a unique name, such that one may be able to draw the structure from the name and deduce the name from the structure.

    Systematic nomenclature is based on the name of the \(\ce{C}\) chain and the name of the reactive part of the molecule, called a functional group. Chemical reactions involve the making and breaking of chemical bonds that usually take place in the functional groups. Therefore, the making and breaking of chemical bonds, followed by functional groups, are described next before describing IUPAC nomenclature.

    Basic chemical reaction types

    Chemical reactions, i.e., making and breaking of chemical bonds, are divided into two major classes, homolytic and heterolytic bond making and breaking, as described next.

    Homolytic bond making and breaking

    A covalent bond is formed by sharing valence electrons, one from each atom, e.g., as in the formation of \(\ce{Cl2}\) molecule by the following reaction: \[\ce{{\LARGE :}\overset{\Huge{\cdot\cdot}}{\underset{\Huge{\cdot\cdot}}{Cl}}{\LARGE\cdot} + {\LARGE \cdot}\overset{\Huge{\cdot\cdot}}{\underset{\Huge{\cdot\cdot}}{Cl}}{\LARGE :} -> {\LARGE :}\overset{\Huge{\cdot\cdot}}{\underset{\Huge{\cdot\cdot}}{Cl}}-\overset{\Huge{\cdot\cdot}}{\underset{\Huge{\cdot\cdot}}{Cl}}{\LARGE :} }\nonumber\] Movement of valence electrons in chemical reactions is shown by curly arrows \(\huge\curvearrowright\). The tail of the arrow is placed where the electrons to be moved are located, and the head points where the electrons move to (\(\text {tail} {\huge\curvearrowright}\text head\)). Regular curly arrows \(\huge\curvearrowright\) show movement of two electrons, a lone pair or a \(\pi\)-bonding pair, and curly half-headed arrows clipboard_ed3ec0933c4f5b873347b61ccb3545503.png show movement of a single electron.

    Bond formation, in which both atoms contribute one electron to form a covalent bond, is known as homolytic bond formation. e.g.,

    clipboard_e91ec151d1696a97a198307a409da3c81.png.

    The reverse of it, i.e., bond breaking, in which both fragments receive one electron, is called homolytic bond breaking, e.g.,

    clipboard_eb08690192f63d54fd1d41be43bfca008.png.

    Energy released during homolytic bond making is the same amount of energy needed for homolytic bond breaking, which is called the bond dissociation energy (BDE).

    Heterolytic bond making and breaking

    Bond formation in which both the bonding electrons are donated by one atom is known as heterolytic bond formation, e.g.,

    clipboard_e523543afab865bf3d33a12c0245d7055.png

     Reverse of it, i.e., bond breaking, in which both the bonding electrons are received by one of the fragments, is called heterolytic bond breaking, e.g., 

    clipboard_e30ddf541ad4e6b4136f451702627c26f.png

    Energy needed for heterolytic bond breaking is not the same as in homolytic bond breaking, because the products of the two are different. Heterolytic bond breaking typically occurs in polar bonds, where the bonding electrons are transferred to the more electronegative atom, whereas homolytic bond breaking usually takes place in nonpolar bonds. This is because the atomic orbital of the more electronegative atom is closer in energy to the molecular orbital. In contrast, in a nonpolar bond, the atomic orbitals of both atoms are about the same distance away from the molecular orbital in terms of energy, as shown in Figure \(\PageIndex{1}\). Furthermore, most chemical reactions in biological systems, as well as in the laboratory, occur in solution, where polar solvents stabilize charges, making heterolytic processes more favorable. Therefore, the reactive sites in organic molecules, called functional groups, are usually associated with polar bonds between \(\ce{C}\) and heteroatoms like \(\ce{O}\), \(\ce{N}\), halogens, etc.

    clipboard_e80ea156bd15972d21a0c5b9b3721f153.png
    Figure \(\PageIndex{1}\): Depiction of a MO diagram of a nonpolar covalent bond (left) and a polar covalent bond (right). In both cases, a bond is a shared pair of electrons. (Copyright; Krishnavedala, Public domain, via Wikimedia Commons)

    Functional groups

    A functional group is a group of atoms in an organic molecule that is associated with a characteristic set of chemical properties.

    A functional group usually contains polar bonds, e.g., alkyl halide \(\ce{(R)3\overset{\delta{+}}{C}{-}\overset{\delta{-}}{Cl}}\), alcohol \(\ce{(R)3\overset{\delta{+}}{C}{-}\overset{\delta{-}}{O}{-}\overset{\delta{+}}{H}}\), carbonyl \(\ce{(R)2\overset{\delta{+}}{C}{=}\overset{\delta{-}}{O}}\), etc., or a combination of these, e.g., carboxylic acid \(\ce{R-\!\!{\overset{\overset{\huge\enspace\!{\overset{\Large{\delta{-}}}{\Huge\ce{O}}}}|\!\!|\enspace}{\underset{\delta{+}}{\ce{C}}}}\!\!-\overset{\delta{-}}{O}-\overset{\delta{+}}{H}}\), which is a combination of a carbonyl and an alcohol groups, and acid halid \(\ce{R-\!\!{\overset{\overset{\huge\enspace\!{\overset{\Large{\delta{-}}}{\Huge\ce{O}}}}|\!\!|\enspace}{\underset{\delta{+}}{\ce{C}}}}\!\!-\overset{\delta{-}}{Cl}}\), which is a combination of a carbonyl and an alkyl halide groups, etc., where \(\ce{R}\) represents the rest of the organic molecule. Functional groups usually react through heterolytic chemical processes, known as the polar reaction mechanism.

    Organic compounds containing only \(\ce{C}\) and \(\ce{H}\) atoms are called hydrocarbons. Hydrocarbons that have only single bonds are called alkanes, those having at least one double \(\ce{C=C}\) bond are called alkenes, and those having at least one triple \(\ce{C\equiv C}\) bond are called alkynes. The \(\pi\)-bonds in \(\ce{C=C}\) and \(\ce{C\equiv C}\) are also called unsaturation. Since \(\pi\)-bond is weaker than a \(\sigma\)-bond and its electrons are relatively less tightly held by the nuclei, they are easily donated in chemical reactions. Therefore, \(\ce{C=C}\) and \(\ce{C\equiv C}\) are functional groups. Alkanes are the least reactive class of organic compounds as they do not have functional groups. Alkanes typically react through a homolytic chemical process, known as the free radical mechanism.

    The structure and names of the most common functional groups in organic compounds are described in the next section about organic nomenclature. Further details are provided in the next chapters.

    Introduction to IUPAC nomenclature

    This introduction to the IUPAC nomenclature is extracted from: IUPAC, Pure Appl. Chem. 2020, https://doi.org/10.1515/pac-2019-
    0104
    . The IUPAC names are generated using ACD/ChemSketch (freeware). The structures are drawn using KingDraw for PC.

    The structure of the IUPAC nomenclature of an organic compound, with the parts labeled, is shown in Figure \(\PageIndex{2}\) and described next.

    1. It is the parent chain, which is usually the longest carbon chain on which a characteristic functional group is present.
    2. It is a suffix representing unsaturation, i.e., it tells whether \(\ce{C}\) atoms have only single bonds or also have double or triple bonds.
    3. Represents the suffix of the senior functional group.
    4. It is an alphabetical list of prefixes representing branches on the parent chain or non-senior functional groups, collectively called substituents.
    5. The locant that tells the position on the parent chain of a substituent is listed next to it; the numbers are listed in increasing order, separated by commas, and are distinguished from alphabets by hyphens.
    6. It is a multiplier telling how many times the substituted attached to it is repeated; the multiplier is not counted in alphabetization of the substituents, and
    7. is a stereodescriptor preceded by the locant number of the stereogenic center if present in a molecule and enclosed in brackets. When parts of a name belong together, they are enclosed in brackets in the nesting order {[( )]}.
    clipboard_e3d6e90decce88708d868905f6fbaceeb.png
    Figure \(\PageIndex{2}\): Structure of the IUPAC nomenclature is illustrated with components labeled: a) is the parent chain, b) is suffix indicating unsaturation, c) is the suffix representing senior group, d) are prefixes representing substituents listed in alphabetic order, e) are locant numbers separated from each other by comma and from the alphabets by hyphens, f) is the multiplier, g) is is the stereodescriptor enclosed in brackets. (Copyright; Public domain).

    Naming simple organic compounds needed in this course is described in the next section, starting with hydrocarbons, followed by compounds containing non-characteristic functional groups, and finally, compounds containing characteristic functional groups. Note: stereodescripters are ignored in this chapter and will be described and added to the nomenclature in the next chapter.

    Nomenclature of hydrocarbons

    Classification of hydrocations illustratedHydrocarbons are organic compounds containing only \(\ce{C}\) and \(\ce{H}\) atoms. They are divided into two major classes: i) aliphatic, which do not have any aromatic ring, and ii) aromatic, which contain at least one aromatic ring, most often a benzene ring, \(\ce{C6H6}\) a six-\( \ce{C}\) chain containing alternate single and double bonds. The aliphatic hydrocarbons are divided into three sub-classes: i) alkane containing only single \(\ce{C-C}\) bonds, ii) alkene containing at least one double \(\ce{C=C}\), and alkyne containing at least one triple \(\ce{C\equiv C}\) bond, as illustrated in the figure on the right.

    Straight-chain alkane

    IUPAC name of a straight chain has to parts: stem name, listed in Table \(\PageIndex{3}\) that tells how many \(\ce{C}\) atoms are in the chain and suffix -ane where -e tells it is a hydrocarbn and -an- tells it is an alkane.

    For example, \(\ce{CH3CH2CH2CH2CH3}\) is pentane, where pent- is the stem name for five-\(\ce{C}\) chain and -ane is the suffix for an alkane. Similarly, \(\ce{CH4}\) is methane, \(\ce{CH3CH3}\) is ethane, \(\ce{CH3CH2CH3}\) is propane, and so on.

    Table \(\PageIndex{3}\): List of stem names for up to twenty \(\ce{C}\) atoms in a chain.
    Number of carbons 1 2 3

    4

    5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
    Stem name Meth Eth Prop But Pent Hex Hept Oct Non Dec Undec Dodec Tridec Tetradec Pentadec Hexadec Heptadec Octadec Nonadec Icos
    Skeletal structure of a straight chain may be zigzag or wiggle-waggle

    A straight chain alkene is usually drawn as a zigzag line, but rotation is allowed around each single bond, which may change it into a wiggle-waggle line bond structure, as shown in Figure \(\PageIndex{4}\).

    clipboard_e62ddf062fa0dedbacff1d85765b0ba65.pngclipboard_e13f35461899afc8b8331985fe3c0b1df.png
    clipboard_e95c0831263e00775b653d109ea214f6d.pngclipboard_e74299b9f79f250701d4a7d6c4b87d8aa.png
    clipboard_e3fca11e34762cc82b6bb947040f35b18.pngclipboard_e68f09ba81f3d604e26e8f469b604521b.png
    clipboard_e6183ee285a2f38e152f3fd07e288e3da.pngclipboard_efd8834f16c871da947e841ae04eb8ed1.png
    clipboard_e401fa3faf36760739df42a7b0e0594ac.pngclipboard_eafd99b455fc34efd835f8608977f3ec9.png
    Figure \(\PageIndex{4}\): Skeletal structures of decane (\(\ce{C10H22}\)) drawn as regular zigzag (left) and in four other shapes resulted by rotation around \(\ce{C-C}\) single bonds: semi-condensed formulas (top) and the corresponding skeletal formulas (bottom) are shown. (Copyright; Public domain)

    Branched alkane

    1. Find the longest continuous \(\ce{C}\)-chain and name it as a straight chain alkane; it is the parent chain in the IUPAC name of the compound.
      • If there is a tie, preference goes to the chain with more branches.
    2. Name all of the branches as straight chain alkanes, but with the suffix -ane replaced with -yl for the branch name; list the branches, referred to as substituents, alphabetically before the parent name with no spaces between the names.
      • If the same branch appears more than once, list it once with a multiplier prefix. The multiplier prefixes are listed in Table \(\PageIndex{5}\).
    3. Number the \(\ce{C}\) atoms of the parent chain from #1 for one end, continuously increasing till the other end, beginning from the end that assigns a lower number to the point of attachment of the first branch.
      • If there is a tie, preference goes to the branch that is first in alphabetical order.
        • If there is still a tie, the preference goes to the third branch.
    4. Insert the locant number, which is the point of attachment of the branch on the parent chain, before the branch name, separated by hyphens from the alphabet.
      • If a branch is repeated, list the locant number of each in increasing numeric order, separated by commas before the multiplier prefix.
        • If a repeat branch is on the same locant, repeat the locant number.
    5. If a branch is further branched, name it by the above four rules with the following changes.
      1. Numbering of the parent chain in the branch begins from the end that assigns a lower number to the \(\ce{C}\) attached to the parent chain of the compound.
      2. Suffix -ane is replaced with -yl with a locant number before it, which is the number of the \(\ce{C}\) in the branch that is attached to the parent chain of the compound.
      3. The entire name of the branch is enclosed in brackets and listed in alphabetical order, along with other branches, preceded by its locant number.
    Table \(\PageIndex{5}\): Multiplier prefixes for simple/complex entities*
    No Simple Complex No Simple Complex No Simple Complex No Simple Complex
    2 di bis 5 penta pentakis 8 octa octakis 11 undeca undecakis
    3 tri tris 6 hexa hexakis 9 nona nonakis 12 dodeca dodecakis
    4 tetra tetrakis 7 hepta heptakis 10 deca decakis 20 icosa icosakis
    *Example simple: dipropyl, example complex: bis(2-methylpropyl).

    The rules #1 to 5 above are explained through application to the following examples. structure of 2-ethyldecane

    The structure shown in the figure on the right is 4-ethyldecane —numbers in blue show the numbering of the parent chain in this and the following structures. Here is the breakdown of the nomenclature: the parent chain is "decane" (not nonane, rule#1); the branch name is "ethyl" note ethane and listed before the parent "ethyldecane" with no space between the words by rule#2; numbering begins from the end that assigns #4 to the branch (not from the other end that will assign it #7) rule#3, and its final name after applying rule#4 is "4-ethyldecane".

    clipboard_ec977ee1acb3d32c65db4918152f5d6e0.pngThe structure in the figure on the left is 3-ethyl-2-methylhexane. Here is the breakdown of the nomenclature: the parent chain is the one with two branches, not the one with one branch (rule#1, if there is a tie, preference goes to the chain with more branches); the branches are listed in alphabetic order (not by the locant number) rule#2, and the locant nuber of each branch is inserted before the branch name (rule#4).

    structure of 3-ethyl-5-methylheptaneThe structure in the figure on the right is 3-ethyl-5-methylheptane. Numbering from either side gives #3 to the first substituent. The tie is broken by giving preference to ethyl, which alphabetically comes before methyl (Rule#3).

    structure of 3,3,4-trimethylhexaneThe structure on the left is 3,3,4-trimethylhexane. The numbering from either side is the same for the first substituent, so preference is given to the third substituent (rule#3). Methyl substituent repeats three times, so it is listed once with a multiplier of three (Rule#2). Methyl substituent repeats on #3, so the locant number is also repeated (rule#4).

    clipboard_eb8e931a87cba25be59930e52e967c4e3.pngThe structure on the right is 5-(2-methylpentan-3-yl)decane. Numbers in blue represent the numbering of the parent, and numbers in orange represent the numbering in the branch chain. Here is its breakup. The longest chain is ten-\(\ce{C}\) atoms, so the parent name is decane. Numbering of the parent begins from left to assign a lower number to the branch. The branch is complex, so it is named according to rule#5: Numbering from either side assigns #3 to the point of attachment to the parent, so numbering begins from left to give preference to the methyl branch. The prefix -ane is replaced with -yl with locant, i.e., the point of attachment from the branch to the parent is inserted before the prefix (3-yl). The branch name is enclosed in brackets and listed before the parent name, preceded by its locant number on the parent (5-).

    Cycloalkane

    Open-chain aliphatic hydrocarbons are called acyclic, and those containing a cyclic structure are cyclic hydrocarbons. The rules of the acyclic alkanes, but with the following change, name a cycloalkane.

    1. A cycloalkane with no substituent on it has the same name as a straight-chain alkane containing the same number of \(\ce{C}\) atoms, but with the prefix cyclo- attached.
    2. A cycloalkane with one branch is named by listing the branch name before the parent cycloalkane name, without locant number or space.
      • According to the current IUPAC rules, cyclic structure is the parent name, even if the branch has more \(\ce{C}\) atoms, except when there is a characteristic group or other factor that can change the preference. (Note: in earlier versions, between cyclic and acyclic, the one with more \(\ce{C}\) atoms was the parent.
    3. A cycloalkane with two branches is named by listing the branch names in alphabetical order before the parent name, preceded by their locant numbers.
      • The branch alphabetically first receives locant #1, and the numbering proceeds clockwise or counterclockwise, whichever assigns a lower number to the second branch.
    4. A cycloalkane with more than two branches is named by listing the branch names in alphabetical order before the parent name, preceded by their locant numbers, where the locant number#1 and the direction to proceed clockwise or counterclockwise is chosen such that the total of the set of locant numbers is the lowest possible.

    The application of the above rules is explained with examples in Figure \(\PageIndex{6}\). The structure on the left in Figure \(\PageIndex{6}\) is three-\(\ce{C}\) cycle named cyclopropane by rule#1. The next one has one methyl branch and is named methylcyclohexane by rule#2. The location number for one branch is not needed, as it is always #1. The next structure is named 1-ethyl-3-methylcyclopentane by rule#3; it has two branches, numbering begins from ethyl, which is alphabetically before methyl, and numbering continues counterclockwise to assign a lower number to the methyl branch. The next structure is named 2-ethyl-1,4-dimethylcyclohexane by rule#4: locant of methyl near ethyl is chosen #1 and continued counterclockwise to achieve the lowest total of the set of locant numbers (\(1+2+4 = 7\)). All other options will have a higher total set of locant numbers, e.g., 1-ethyl-2,5-dimethylcyclohexane (\(1+2+5=8\)) and 3-ethyl-1,4-dimethylcyclohexane (\(3+1+4=8\)). The structure on the right in Figure \(\PageIndex{6}\) is named (4-methylhexyl)cyclobutane by rule#4: cyclobutane is the parent instead of hexane because the cyclic structure has preference over acyclic if other factors are the same. The branch is complex, so it is named by rule#5 of branched alkane rules.

    clipboard_e8dfe37e61b0880e223a42bb86aa5e639.pngcyclopropane
    clipboard_e4ead0febc1416348f03c6388361afcb5.pngmethylcyclohexane
    clipboard_e6fef31a37888ee9cfa55a51b92782f93.png1-ethyl-3-methylcyclopentane
    clipboard_ee79a0af82f6fbc7df328df69cfc07dd4.png2-ethyl-1,4-dimethylcyclohexane
    clipboard_e10b912a42e8cb99e626a879ae8cb8229.png(4-methylhexyl)cyclobutane
    Figure \(\PageIndex{6}\): Examples of cycloalkane nomenclature. Numbers in blue show the parent chain numbering, and numbers in green show numbering in the branch. Explanation is in the text above. (Copyright; Public domain)

    Bicycloalkane

    Compounds containing more than one cyclic structure are called polycyclic. Nomenclature of bicycloalkenes, i.e., alkanes containing two cyclic structures, is described here. There are four major classes of bicycloalkanes, as shown in Figure \(\PageIndex{7}\). Isolated rings have no atoms in common. They are named by the rules of alkanes and cycloalkanes, by selecting a larger ring as the parent and the smaller a substituent. For example, the structure on the left in Figure \(\PageIndex{7}\) is cyclobutylcyclopentane.

    clipboard_ea04dd30d63bd7cc26aadb44b17866909.pngcyclobutylcyclopentane
    clipboard_e8088351b6b6deba60d256fef291f1075.pngspiro[4.2]heptane
    clipboard_e23699229f794f9112cb0005aa266b693.pngbicyclo[4.3.0]nonane
    clipboard_e3f3a0a9e0e3bb9979a896318a5507472.pngbicyclo[4.3.2]undecane
    Figure \(\PageIndex{7}\): Paste Caption Here

    The second class consists of spiro-rings that share one atom in common. The spiro-rings have two bridges comprising carbons that are not common between the rings. They are named by using the prefix spiro, followed by the number of atoms in each bridge in decreasing numeric order, separated by a period, and enclosed in square brackets, followed by the name of the straight chain alkane corresponding to the total number of carbon atoms in the compound. For example, the structure in Figure \(\PageIndex{7}\), 2nd from left, is spiro[2,4]heptane: 2,4 represents two carbons in the smaller and four in the larger bridge, and heptane because it has a total of seven \(\ce{C}\) atoms. Note that the shared \(\ce{C}\) is not counted in any bridge.

    The 3rd major class is fused rings that have two atoms and one covalent bond in common. The common atoms connect the three bridges and are called bridgehead carbons. Their name begins with the prefix bicyclo, followed by the number of atoms in each bridge in decreasing order, separated by a period, and enclosed in square brackets, followed by the name of the straight chain alkane corresponding to the total number of carbon atoms in the compound. For example, the 3rd structure from left in Figure \(\PageIndex{7}\) is bicyclo[4.3.0]nonane. It has four carbons in the largest bridge, three in the second largest, and the middle bridge without any carbon is the smallest, which makes [4.3.0] part of the name, and there are a total of nine carbons, which is represented by nonane in the last part of the name. Note that the bridgehead carbons do not count in any bridge.

    10-methylbicyclo[4,3.2]undecane8-ethyl-6-methylbicyclo[3.2.1]octaneThe 4th class is bridged rings that have more than two atoms in common, i.e., all three bridges have one or more \(\ce{C}\) each. Bridged rings are more common in natural products than the other bicycloalkanes. Their name begins with the prefix bicyclo, followed by the number of atoms in each bridge in decreasing order, separated by a period, and enclosed in square brackets, followed by the name of the straight chain alkane corresponding to the total number of carbon atoms in the compound. for example, structure on the right in Figure \(\PageIndex{7}\) is bicyclo[4.3.2]undecane. Numbering, if needed, starts from a bridgehead, goes through the largest bridge first, followed by the 2nd largest, and finally through the smallest bridge. For example, the figure on the left, which is 1-methylbicyclo[4.3.2]undecane, and the figure on the right, which is 8-ethyl-6-methylbicyclo[3.2.1]octane, show the numbers in blue fonts.

    Primary, secondary, tertiary, and quaternary \(\ce{C}\) and \(\ce{H}|)

    primary, secondary, tertiary, and quaternary designation for carbon and hydrogen illustratedThe designations primary, secondary, tertiary, and quaternary for carbons and for hydrogens on them are illustrated in the figure on the right, and described below.

    • The terminal \(\ce{C}\), i.e., the \(\ce{C}\) with only one single bond with another \(\ce{C}\) is a primary carbon.
    • The \(\ce{C}\) with two single bonds to other \(\ce{C}\) atoms is a secondary carbon.
    • The \(\ce{C}\) with three single bonds to other \(\ce{C}\) atoms is a tertiary carbon.
    • The \(\ce{C}\) with four single bonds to other \(\ce{C}\) atoms is a quaternary carbon.
    • A \(\ce{H}\) on a primary \(\ce{C}\) is a primary hydrogen, a \(\ce{H}\) on a secondary \(\ce{C}\) is a secondary hydrogen, and a \(\ce{H}\) on a tertiary \(\ce{C}\) is a tertiary hydrogen. A quaternary \(\ce{C}\) does not have any \(\ce{H}\) on it.
    Cis/trans isomerism in cycloalkane and alkene

    Butane conformations There is almost free rotation possible around a single bond, as shown for \(\ce{\overset{3}{C}-\overset{4}{C}}\) bond of butane in the figure on the right (prepared using https://chemagic.org/molecules/amini.html, Copyright: Public domain). However, the rotation around \(\ce{C-C}\) bonds of a cycloalkane is restricted due to the carbon-bridge connecting the bonds. Rotation around a double bond (\(\ce{C=C}\)) is also restricted because a \(\pi\)-bond weakens when the \(p\)-orbitals are not aligned and breaks completely when they are at a 90° angle from each other. Therefore, two groups on any two \(\ce{C}\) atoms of a cycloalkane ring or on the two \(\ce{C}\) atoms of a \(\ce{C=C}\) pointing in the same direction are called in a cis-relationship, and those pointing in the opposite direction are called in a trans-relationship. structure of cis and trans 1,2-dimethylcyclopentaneFor example, cis-1,2-cyclopentane and trans-1,2-cyclopentane, shown in the figure on the right, are different compounds having the same molecular formula, i.e., they are isomers. Such isomers, which have the same atom-connectivity but different orientations, are called stereoisomers.

    Stereoisomers need stereodescriptors in their IUPAC nomenclature. The cis/trans were stereodescriptors before, but they have been replaced with new stereodescriptors in the current IUPAC nomenclature. Still, cis/trans terms are used to describe the orientation of two groups relative to each other. The stereodescriptors and the IUPAC nomenclature with the stereodescriptors will be described in the next chapter.

    Common branch names accepted in IUPAC nomenclature

    structure of isopentylundecane4-isopropyl-5-methyloctaneSome common names that are often used in literature are accepted in IUPAC nomenclature. They will be mentioned when used in this course. Some alkyl branch names accepted in IUPAC nomenclature are shown in Table \(\PageIndex{7}\). These branch names should be better committed to memory.

    For example, 6-(3-methylbutyl)undecane and isopentylundecane are both IUPAC names of the same structure shown on the left, and 4-methyl-5-(propan-2-yl)octane and 4-isopropyl-5-methyloctane are both IUPAC names of the same structure shown on the right.

    Table \(\PageIndex{7}\): Common names of some alkyl branches accepted in IUPAC names along with the corresponding systematic branch names.*
    Structure: clipboard_ed6b691f2691adaa6a8b4e1ee1f4e3bd7.png clipboard_e4b0a0749f4bafe205033ba678dfd84a8.png clipboard_ea55019dd11ab6cdb6fe5638bef0b59a3.png clipboard_e70cf95842de00ba93d6d2cd8957095f2.png clipboard_e1875c9cb36d8dd0320b960a87073d590.png clipboard_effa938e1d0c835bf34748d714dfe6827.png clipboard_e9e5088a4853407ee26060764c9c24074.png clipboard_e08249a591933284eb8d50f710ee3a909.png clipboard_eaa6d7bfdb07a2dc3beab1a526554d964.png
    Common name:   isopropyl   sec-butyl isobutyl tert-butyl   isopentyl neopentyl
    Systematic name: propyl (propan-2-yl) butyl (butan-2-yl) (2-methylpropyl) (1,1-dimethylethyl) pentyl (3-methylbutyl) (2,2-dimethylpropyl)
    * Iso- and neo- are merged with the name and counted in alphabetization, but sec- and ter- are italicized and not counted in alphabetization of the branch name. Either one can be used in an IUPAC name. (Copyright; Public domain)

    This page titled 2.3: Organic nomenclature -alkanes was last modified on Tue, 18 Aug 2026 13:13:58 GMT and is shared under a Public Domain license and was authored, remixed, and/or curated by Muhammad Arif Malik.