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Computational Biology - Genomes, Networks, and Evolution · LibreTexts

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    1. [1] Embl allextron database - cassette exons.
    2. [2] Batzoglou S et al. Arachne: a whole-genome shotgun assembler. Genome Res, 2002.
    3. [3] Manolis Kellis. Lecture slides 04: Comparative genomics i. September 21,2010.
    4. [4] Manolis Kellis. Lecture slides 05.1: Comparative genomics ii. September 23, 2010.
    5. [5] Manolis Kellis. Lecture slides 05.2: Comparative genomics iii, evolution. September 25,2010.
    6. [6] Nikolaus Rajewsky Kevin Chen. The evolution of gene regulation by transcription factors and micrornas. Nature Reviews Genetics, 2007.
    000093 00000.pngFigure 5.27: S-LAGAN results.
    page129image53653696.pngpage129image53648704.png
    Figure 5.28: S-LAGAN results for IGF locus.
    page129image53653072.pngpage129image53653488.png
    Figure 5.29: S-LAGAN results for IGF locus.

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    [7] Douglas Robinson and Lynn Cooley. Examination of the function of two kelch proteins generated by stop codon suppression. Development, 1997.

    [8] Stark. Discovery of functional elements in 12 drosophila genomes using evolutionary signatures. Nature, 2007.
    [9] Angela Tan. Lecture 15 notes: Comparative genomics i: Genome annotation. November 4, 2009.

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