13.10: References

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    13.10: References

    Alcott, L.J., Mills, B.J.W., Poulton, S.W., 2019. Stepwise Earth oxygenation is an inherent property of global biogeochemical cycling. Science 366, 1333–1337. https://doi.org/10.1126/science.aax6459

    Angle, J.C., Morin, T.H., Solden, L.M., Narrowe, A.B., Smith, G.J., Borton, M.A., Rey-Sanchez, C., Daly, R.A., Mirfenderesgi, G., Hoyt, D.W., Riley, W.J., Miller, C.S., Bohrer, G., Wrighton, K.C., 2017. Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions. Nature Communications 8, 1567. https://doi.org/10.1038/s41467-017-01753-4

    Barry, P.H., de Moor, J.M., Giovannelli, D., Schrenk, M., Hummer, D.R., Lopez, T., Pratt, C.A., Segura, Y.A., Battaglia, A., Beaudry, P., Bini, G., Cascante, M., d’Errico, G., di Carlo, M., Fattorini, D., Fullerton, K., Gazel, E., González, G., Halldórsson, S.A., Iacovino, K., Ilanko, T., Kulongoski, J.T., Manini, E., Martínez, M., Miller, H., Nakagawa, M., Ono, S., Patwardhan, S., Ramírez, C.J., Regoli, F., Smedile, F., Turner, S., Vetriani, C., Yücel, M., Ballentine, C.J., Fischer, T.P., Hilton, D.R., Lloyd, K.G., 2019. Forearc carbon sink reduces long-term volatile recycling into the mantle. Nature 568, 487–492. https://doi.org/10.1038/s41586-019-1131-5

    Beaulieu, J.J., Smolenski, R.L., Nietch, C.T., Townsend-Small, A., Elovitz, M.S., Schubauer-Berigan, J.P., 2014. Denitrification alternates between a source and sink of nitrous oxide in the hypolimnion of a thermally stratified reservoir. Limnol. & Oceanog. 59, 495–506. https://doi.org/10.4319/lo.2014.59.2.0495

    Bekker, A., Holland, H.D., 2012. Oxygen overshoot and recovery during the early Paleoproterozoic. Earth & Plan. Sci. Let. 317–318, 295–304. https://doi.org/10.1016/j.epsl.2011.12.012

    Bizic, M., 2021. Phytoplankton photosynthesis: an unexplored source of biogenic methane emission from oxic environments. J. Plankton Research. https://doi.org/10.1093/plankt/fbab069

    Bižić M., Klintzsch T., Ionescu D., Hindiyeh M. Y., Günthel M., Muro-Pastor A. M., Eckert W., Urich T., Keppler F., Grossart H.-P., 2020. Aquatic and terrestrial cyanobacteria produce methane. Sci. Adv. 6, eaax5343. https://doi.org/10.1126/sciadv.aax5343

    Bond-Lamberty, B., Thomson, A., 2010. Temperature-associated increases in the global soil respiration record. Nature 464, 579–582. https://doi.org/10.1038/nature08930

    Bourbonnais, A., Letscher, R.T., Bange, H.W., Échevin, V., Larkum, J., Mohn, J., Yoshida, N., Altabet, M.A., 2017. N2O production and consumption from stable isotopic and concentration data in the Peruvian coastal upwelling system. Glob. Biogeochem. Cyc. 31, 678–698. https://doi.org/10.1002/2016GB005567

    Bridgham, S.D., Cadillo-Quiroz, H., Keller, J.K., Zhuang, Q., 2013. Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales. Glob. Change Biol. 19, 1325–1346. https://doi.org/10.1111/gcb.12131

    Brook, G.A., Folkoff, M.E., Box, E.O., 1983. A world model of soil carbon dioxide. Earth Surf. Processes & Landforms 8, 79–88. https://doi.org/10.1002/esp.3290080108

    Butman, D., Raymond, P.A., 2011. Significant efflux of carbon dioxide from streams and rivers in the United States. Nat. Geosci. 4, 839–842. https://doi.org/10.1038/NGEO1294

    Butterbach-Bahl, K., Baggs, E.M., Dannenmann, M., Kiese, R., Zechmeister-Boltenstern, S., 2013. Nitrous oxide emissions from soils: how well do we understand the processes and their controls? Phil. Transact. Royal Soc. B: Biological Sciences 368, 20130122. https://doi.org/10.1098/rstb.2013.0122

    Canarini, A., Schmidt, H., Fuchslueger, L., Martin, V., Herbold, C.W., Zezula, D., Gündler, P., Hasibeder, R., Jecmenica, M., Bahn, M., Richter, A., 2021. Ecological memory of recurrent drought modifies soil processes via changes in soil microbial community. Nat. Comm. 12, 5308. https://doi.org/10.1038/s41467-021-25675-4

    Cavicchioli, R., Ripple, W.J., Timmis, K.N., Azam, F., Bakken, L.R., Baylis, M., Behrenfeld, M.J., Boetius, A., Boyd, P.W., Classen, A.T., Crowther, T.W., Danovaro, R., Foreman, C.M., Huisman, J., Hutchins, D.A., Jansson, J.K., Karl, D.M., Koskella, B., Mark Welch, D.B., Martiny, J.B.H., Moran, M.A., Orphan, V.J., Reay, D.S., Remais, J.V., Rich, V.I., Singh, B.K., Stein, L.Y., Stewart, F.J., Sullivan, M.B., van Oppen, M.J.H., Weaver, S.C., Webb, E.A., Webster, N.S., 2019. Scientists’ warning to humanity: microorganisms and climate change. Nature Rev. Microbiol. 17, 569–586. https://doi.org/10.1038/s41579-019-0222-5

    Chisholm, S.W., Olson, R.J., Zettler, E.R., Goericke, R., Waterbury, J.B., Welschmeyer, N.A., 1988. A novel free-living prochlorophyte abundant in the oceanic euphotic zone. Nature 334, 340–343. https://doi.org/10.1038/334340a0

    Craine, J.M., Fierer, N., McLauchlan, K.K., 2010. Widespread coupling between the rate and temperature sensitivity of organic matter decay. Nat. Geosci. 3, 854–857. https://doi.org/10.1038/ngeo1009

    Crowther, T.W., Todd-Brown, K.E.O., Rowe, C.W., Wieder, W.R., Carey, J.C., Machmuller, M.B., Snoek, B.L., Fang, S., Zhou, G., Allison, S.D., Blair, J.M., Bridgham, S.D., Burton, A.J., Carrillo, Y., Reich, P.B., Clark, J.S., Classen, A.T., Dijkstra, F.A., Elberling, B., Emmett, B.A., Estiarte, M., Frey, S.D., Guo, J., Harte, J., Jiang, L., Johnson, B.R., Kröel-Dulay, G., Larsen, K.S., Laudon, H., Lavallee, J.M., Luo, Y., Lupascu, M., Ma, L.N., Marhan, S., Michelsen, A., Mohan, J., Niu, S., Pendall, E., Peñuelas, J., Pfeifer-Meister, L., Poll, C., Reinsch, S., Reynolds, L.L., Schmidt, I.K., Sistla, S., Sokol, N.W., Templer, P.H., Treseder, K.K., Welker, J.M., Bradford, M.A., 2016. Quantifying global soil carbon losses in response to warming. Nature 540, 104–108. https://doi.org/10.1038/nature20150

    D’Ambrosio, S.L., Harrison, J.A., 2021. Methanogenesis exceeds CH4 consumption in eutrophic lake sediments. Limnol. & Oceanog. Lett. 6, 173–181. https://doi.org/10.1002/lol2.10192

    Davidson, E.A., Janssens, I.A., 2006. Temperature sensitivity of soil carbon decomposition and feedbacks to climate change. Nature 440, 165–173. https://doi.org/10.1038/nature04514

    Davidson, E.A., Swank, W.T., 1986. Environmental Parameters Regulating Gaseous Nitrogen Losses from Two Forested Ecosystems via Nitrification and Denitrification. Appl. & Env. Microbio. 52, 1287–1292. https://doi.org/10.1128/aem.52.6.1287-1292.1986

    Davidson, E.A., Swank, W.T., Perry, T.O., 1986. Distinguishing between Nitrification and Denitrification as Sources of Gaseous Nitrogen Production in Soil. Appl. & Env. Microbio. 52, 1280–1286. https://doi.org/10.1128/aem.52.6.1280-1286.1986

    de Moor, J.M., Kern, C., Avard, G., Muller, C., Aiuppa, A., Saballos, A., Ibarra, M., LaFemina, P., Protti, M., Fischer, T.P., 2017. A New Sulfur and Carbon Degassing Inventory for the Southern Central American Volcanic Arc: The Importance of Accurate Time-Series Data Sets and Possible Tectonic Processes Responsible for Temporal Variations in Arc-Scale Volatile Emissions. Geochem., Geophys., Geosys. 18, 4437–4468. https://doi.org/10.1002/2017GC007141

    Dlugokencky, E.J., Steele, L.P., Lang, P.M., Masarie, K.A., 1994. The growth rate and distribution of atmospheric methane. J. Geophys. Res.: Atmospheres 99, 17021–17043. https://doi.org/10.1029/94JD01245

    Eguchi, J., Seales, J., Dasgupta, R., 2020. Great Oxidation and Lomagundi events linked by deep cycling and enhanced degassing of carbon. Nat. Geosci. 13, 71–76. https://doi.org/10.1038/s41561-019-0492-6

    Friedlingstein, P., Jones, M.W., O’Sullivan, M., Andrew, R.M., Bakker, D.C.E., Hauck, J., Le Quéré, C., Peters, G.P., Peters, W., Pongratz, J., Sitch, S., Canadell, J.G., Ciais, P., Jackson, R.B., Alin, S.R., Anthoni, P., Bates, N.R., Becker, M., Bellouin, N., Bopp, L., Chau, T.T.T., Chevallier, F., Chini, L.P., Cronin, M., Currie, K.I., Decharme, B., Djeutchouang, L.M., Dou, X., Evans, W., Feely, R.A., Feng, L., Gasser, T., Gilfillan, D., Gkritzalis, T., Grassi, G., Gregor, L., Gruber, N., Gürses, Ö., Harris, I., Houghton, R.A., Hurtt, G.C., Iida, Y., Ilyina, T., Luijkx, I.T., Jain, A., Jones, S.D., Kato, E., Kennedy, D., Klein Goldewijk, K., Knauer, J., Korsbakken, J.I., Körtzinger, A., Landschützer, P., Lauvset, S.K., Lefèvre, N., Lienert, S., Liu, J., Marland, G., McGuire, P.C., Melton, J.R., Munro, D.R., Nabel, J.E.M.S., Nakaoka, S.-I., Niwa, Y., Ono, T., Pierrot, D., Poulter, B., Rehder, G., Resplandy, L., Robertson, E., Rödenbeck, C., Rosan, T.M., Schwinger, J., Schwingshackl, C., Séférian, R., Sutton, A.J., Sweeney, C., Tanhua, T., Tans, P.P., Tian, H., Tilbrook, B., Tubiello, F., van der Werf, G.R., Vuichard, N., Wada, C., Wanninkhof, R., Watson, A.J., Willis, D., Wiltshire, A.J., Yuan, W., Yue, C., Yue, X., Zaehle, S., Zeng, J., 2022. Global Carbon Budget 2021. Earth Sys. Sci. Data 14, 1917–2005. https://doi.org/10.5194/essd-14-1917-2022

    Fullerton, K., Schrenk, M., Yücel, M., Manini, E., Basili, M., Rogers, T., Fattorini, D., Carlo, M., d’Errico, G., Regoli, F., Nakagawa, M., Vetriani, C., Smedile, F., Ramírez Umaña, C., Miller, H., Morrison, S., Buongiorno, J., Jessen, G., Steen, A., Lloyd, K., 2021. Effect of tectonic processes on biosphere–geosphere feedbacks across a convergent margin. Nat. Geosci. 14, 1–6. https://doi.org/10.1038/s41561-021-00725-0

    Gao, Y., Wang, Y., Lee, H.-S., Jin, P., 2022. Significance of anaerobic oxidation of methane (AOM) in mitigating methane emission from major natural and anthropogenic sources: a review of AOM rates in recent publications. Environ. Sci.: Adv. 1, 401–425. https://doi.org/10.1039/D2VA00091A

    Garvin, J., Buick, R., Anbar, A.D., Arnold, G.L., Kaufman, A.J., 2009. Isotopic Evidence for an Aerobic Nitrogen Cycle in the Latest Archean. Science 323, 1045–1048. https://doi.org/10.1126/science.1165675

    Glass, J., Orphan, V., 2012. Trace Metal Requirements for Microbial Enzymes Involved in the Production and Consumption of Methane and Nitrous Oxide. Front. Microbio. 3.

    Godfrey, L.V., Falkowski, P.G., 2009. The cycling and redox state of nitrogen in the Archaean ocean. Nat. Geosci. 2, 725–729. https://doi.org/10.1038/ngeo633

    Gruber, N., Galloway, J.N., 2008. An Earth-system perspective of the global nitrogen cycle. Nature 451, 293–296. https://doi.org/10.1038/nature06592

    Guo, M., Zhuang, Q., Tan, Z., Shurpali, N., Juutinen, S., Kortelainen, P., Martikainen, P.J., 2020. Rising methane emissions from boreal lakes due to increasing ice-free days. Env. Res. Let. 15, 064008. https://doi.org/10.1088/1748-9326/ab8254

    Hazen, R., Papineau, D., Bleeker, W., Downs, R., Ferry, J., Coy, T., Sverjrjensky, D., Yang, H., 2008. Mineral evolution. Am. Mineral. 93, 1693–1720.

    IPCC, 2021. Climate Change 2021: The Physical Science Basis. Contribution of Working Group I to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA. https://doi.org/10.1017/9781009157896

    IPCC, 2018. Global warming of 1.5°C. An IPCC Special Report on the impacts of global warming of 1.5°C above pre-industrial levels and related global greenhouse gas emission pathways, in the context of strengthening the global response to the threat of climate change, sustainable development, and efforts to eradicate poverty.

    Javaux, E.J., Knoll, A.H., Walter, M., 2003. Recognizing and interpreting the fossils of early eukaryotes. Orig. Life. Evol. Biosph. 33, 75–94. https://doi.org/10.1023/a:1023992712071

    Jenkinson, D.S., Adams, D.E., Wild, A., 1991. Model estimates of CO2 emissions from soil in response to global warming. Nature 351, 304–306. https://doi.org/10.1038/351304a0

    Ji, B., Yang, K., Zhu, L., Jiang, Y., Wang, H., Zhou, J., Zhang, H., 2015. Aerobic denitrification: A review of important advances of the last 30 years. Biotech. & Bioproc. Eng. 20, 643–651. https://doi.org/10.1007/s12257-015-0009-0

    Jiang, X., Ku, W.L., Shia, R.-L., Li, Q., Elkins, J.W., Prinn, R.G., Yung, Y.L., 2007. Seasonal cycle of N2O: Analysis of data. Glob. Biogeochem. Cyc. 21. https://doi.org/10.1029/2006GB002691

    Kadoya, S., Catling, D.C., Nicklas, R.W., Puchtel, I.S., Anbar, A.D., 2020. Mantle data imply a decline of oxidizable volcanic gases could have triggered the Great Oxidation. Nat. Comm. 11, 2774. https://doi.org/10.1038/s41467-020-16493-1

    Karhu, K., Auffret, M.D., Dungait, J.A.J., Hopkins, D.W., Prosser, J.I., Singh, B.K., Subke, J.-A., Wookey, P.A., Ågren, G.I., Sebastià, M.-T., Gouriveau, F., Bergkvist, G., Meir, P., Nottingham, A.T., Salinas, N., Hartley, I.P., 2014. Temperature sensitivity of soil respiration rates enhanced by microbial community response. Nature 513, 81–84. https://doi.org/10.1038/nature13604

    Kasting, J.F., 2014. 6.6 - Modeling the Archean Atmosphere and Climate, in: Holland, H.D., Turekian, K.K. (Eds.), Treatise on Geochemistry (Second Edition). Elsevier, Oxford, pp. 157–175. https://doi.org/10.1016/B978-0-08-095975-7.01306-1

    Kasting, J.F., 1993. Earth’s Early Atmosphere. Science 259, 920–926. https://doi.org/10.1126/science.11536547

    Katz, L.A., 2012. Origin and diversification of eukaryotes. Annu. Rev. Microbiol. 66, 411–427. https://doi.org/10.1146/annurev-micro-090110-102808

    Kirk, L., Cohen, M.J., 2023. River Corridor Sources Dominate CO2 Emissions from a Lowland River Network. J. Geophys. Res.: Biogeosci. n/a, e2022JG006954. https://doi.org/10.1029/2022JG006954

    Kirk, M.F., Santillan, E.F.U., Sanford, R.A., Altman, S.J., 2013. CO2-induced shift in microbial activity affects carbon trapping and water quality in anoxic bioreactors. Geochim. Cosmochim. Acta 122, 198–208. https://doi.org/10.1016/j.gca.2013.08.018

    Klatt, J.M., Chennu, A., Arbic, B.K., Biddanda, B.A., Dick, G.J., 2021. Possible link between Earth’s rotation rate and oxygenation. Nat. Geosci. 14, 564–570. https://doi.org/10.1038/s41561-021-00784-3

    Knittel, K., Boetius, A., 2009. Anaerobic Oxidation of Methane: Progress with an Unknown Process. Ann. Rev. Microbio. 63, 311–334. https://doi.org/10.1146/annurev.micro.61.080706.093130

    Lueders, T., Friedrich, M.W., 2002. Effects of amendment with ferrihydrite and gypsum on the structure and activity of methanogenic populations in rice field soil. Appl. Environ. Microbiol. 68, 2484–2494.

    Macpherson, G.L., 2009. CO2 distribution in groundwater and the impact of groundwater extraction on the global C cycle. Chem. Geol. 264, 328–336. https://doi.org/10.1016/j.chemgeo.2009.03.018

    Marquart, K.A., Haller, B.R., Paper, J.M., Flynn, T.M., Boyanov, M.I., Shodunke, G., Gura, C., Jin, Q., Kirk, M.F., 2019. Influence of pH on the balance between methanogenesis and iron reduction. Geobiology 17, 185–198. https://doi.org/10.1111/gbi.12320

    Mills, B.J.W., Krause, A.J., Jarvis, I., Cramer, B.D., 2023. Evolution of Atmospheric O2 Through the Phanerozoic, Revisited. Annu. Rev. Earth Planet. Sci. https://doi.org/10.1146/annurev-earth032320-095425

    Morris, J.L., Puttick, M.N., Clark, J.W., Edwards, D., Kenrick, P., Pressel, S., Wellman, C.H., Yang, Z., Schneider, H., Donoghue, P.C.J., 2018. The timescale of early land plant evolution. Proc. Natl. Acad. Sci. 115, E2274–E2283. https://doi.org/10.1073/pnas.1719588115

    Morsink, K., 2017. With every breath you take, thank the ocean. Smithsonian Magazine.

    Mukherjee, I., Large, R.R., Corkrey, R., Danyushevsky, L.V., 2018. The Boring Billion, a slingshot for Complex Life on Earth. Sci. Rep. 8, 4432. https://doi.org/10.1038/s41598-018-22695-x

    North, Justin A., Narrowe Adrienne B., Xiong Weili, Byerly Kathryn M., Zhao Guanqi, Young Sarah J., Murali Srividya, Wildenthal John A., Cannon William R., Wrighton Kelly C., Hettich Robert L., Tabita F. Robert, 2020. A nitrogenase-like enzyme system catalyzes methionine, ethylene, and methane biogenesis. Science 369, 1094–1098. https://doi.org/10.1126/science.abb6310

    Och, L.M., Shields-Zhou, G.A., 2012. The Neoproterozoic oxygenation event: Environmental perturbations and biogeochemical cycling. Earth-Sci. Rev. 110, 26–57. https://doi.org/10.1016/j.earscirev.2011.09.004

    Overholt, W.A., Trumbore, S., Xu, X., Bornemann, T.L.V., Probst, A.J., Krüger, M., Herrmann, M., Thamdrup, B., Bristow, L.A., Taubert, M., Schwab, V.F., Hölzer, M., Marz, M., Küsel, K., 2022. Carbon fixation rates in groundwater similar to those in oligotrophic marine systems. Nat. Geosci. https://doi.org/10.1038/s41561-022-00968-5

    Paranaíba, J.R., Quadra, G., Josué, I.I.P., Almeida, R.M., Mendonça, R., Cardoso, S.J., Silva, J., Kosten, S., Campos, J.M., Almeida, J., Araújo, R.L., Roland, F., Barros, N., 2020. Sediment drying-rewetting cycles enhance greenhouse gas emissions, nutrient and trace element release, and promote water cytogenotoxicity. PLOS ONE 15, e0231082. https://doi.org/10.1371/journal.pone.0231082

    Park, S., Croteau, P., Boering, K.A., Etheridge, D.M., Ferretti, D., Fraser, P.J., Kim, K.-R., Krummel, P.B., Langenfelds, R.L., van Ommen, T.D., Steele, L.P., Trudinger, C.M., 2012. Trends and seasonal cycles in the isotopic composition of nitrous oxide since 1940. Nat. Geosci. 5, 261–265. https://doi.org/10.1038/ngeo1421

    Partensky, F., Hess, W.R., Vaulot, D., 1999. Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol. Mol. Biol. Rev. 63, 106–127. https://doi.org/10.1128/MMBR.63.1.106-127.1999

    Planavsky, N.J., Asael, D., Hofmann, A., Reinhard, C.T., Lalonde, S.V., Knudsen, A., Wang, X., Ossa Ossa, F., Pecoits, E., Smith, A.J.B., Beukes, N.J., Bekker, A., Johnson, T.M., Konhauser, K.O., Lyons, T.W., Rouxel, O.J., 2014. Evidence for oxygenic photosynthesis half a billion years before the Great Oxidation Event. Nat. Geosci. 7, 283–286. https://doi.org/10.1038/ngeo2122

    Plant, G., Kort, E.A., Brandt, A.R., Chen, Y., Fordice, G., Gorchov Negron, A.M., Schwietzke, S., Smith, M., Zavala-Araiza, D., 2022. Inefficient and unlit natural gas flares both emit large quantities of methane. Science 377, 1566–1571. https://doi.org/10.1126/science.abq0385

    Poeplau, C., Sigurðsson, P., Sigurdsson, B.D., 2020. Depletion of soil carbon and aggregation after strong warming of a subarctic Andosol under forest and grassland cover. SOIL 6, 115–129. https://doi.org/10.5194/soil-6-115-2020

    Postma, D., Jakobsen, R., 1996. Redox zonation: Equilibrium constraints on the Fe(III)/SO4-reduction interface. Geochim. Cosmochim. Acta 60, 3169–3175.

    Poulton, S.W., Fralick, P.W., Canfield, D.E., 2004. The transition to a sulphidic ocean ∼ 1.84 billion years ago. Nature 431, 173–177. https://doi.org/10.1038/nature02912

    Rees, A.P., Bange, H.W., Arévalo-Martínez, D.L., Artioli, Y., Ashby, D.M., Brown, I., Campen, H.I., Clark, D.R., Kitidis, V., Lessin, G., Tarran, G.A., Turley, C., 2022. Nitrous oxide and methane in a changing Arctic Ocean. Ambio 51, 398–410. https://doi.org/10.1007/s13280-021-01633-8

    Reinhard, C.T., Planavsky, N.J., Olson, S.L., Lyons, T.W., Erwin, D.H., 2016. Earth’s oxygen cycle and the evolution of animal life. Proc. Natl. Acad. Sci. 113, 8933–8938. https://doi.org/10.1073/pnas.1521544113

    Repeta, D.J., Ferrón, S., Sosa, O.A., Johnson, C.G., Repeta, L.D., Acker, M., DeLong, E.F., Karl, D.M., 2016. Marine methane paradox explained by bacterial degradation of dissolved organic matter. Nat. Geosci. 9, 884–887. https://doi.org/10.1038/ngeo2837

    Ritchie, G.A., Nicholas, D.J., 1972. Identification of the sources of nitrous oxide produced by oxidative and reductive processes in Nitrosomonas europaea. Biochem. J. 126, 1181–1191. https://doi.org/10.1042/bj1261181

    Roden, E.E., 2003. Diversion of electron flow from methanogenesis to crystalline Fe(III) oxide reduction in carbon-limited cultures of wetland sediment microorganisms. Appl. Environ. Microbiol. 69, 5702.

    Roden, E.E., Wetzel, R.G., 2003. Competition between Fe(III)-reducing and methanogenic bacteria for acetate in iron-rich freshwater sediments. Microbial Ecol. 45, 252–258.

    Rogers, T.J., Buongiorno, J., Jessen, G.L., Schrenk, M.O., Fordyce, J.A., de Moor, J.M., Ramírez, C.J., Barry, P.H., Yücel, M., Selci, M., Cordone, A., Giovannelli, D., Lloyd, K.G., 2022. Chemolithoautotroph distributions across the subsurface of a convergent margin. ISME J. 17, 140–150. https://doi.org/10.1038/s41396-022-01331-7

    Rößger, N., Sachs, T., Wille, C., Boike, J., Kutzbach, L., 2022. Seasonal increase of methane emissions linked to warming in Siberian tundra. Nat. Clim. Change. https://doi.org/10.1038/s41558-022-01512-4

    Ryden, J.C., 1983. Denitrification loss from a grassland soil in the field receiving different rates of nitrogen as ammonium nitrate. J. Soil Sci. 34, 355–365. https://doi.org/10.1111/j.1365-2389.1983.tb01041.x

    Sanchez-Canete, E.P., Barron-Gafford, G.A., Chorover, J., 2018. A considerable fraction of soil-respired CO2 is not emitted directly to the atmosphere. Sci. Rep. 8, 13518. https://doi.org/10.1038/s41598-018-29803-x

    Satkoski, A.M., Beukes, N.J., Li, W., Beard, B.L., Johnson, C.M., 2015. A redox-stratified ocean 3.2 billion years ago. Earth & Plan. Sci. Lett. 430, 43–53. https://doi.org/10.1016/j.epsl.2015.08.007

    Saunois, M., Stavert, A.R., Poulter, B., Bousquet, P., Canadell, J.G., Jackson, R.B., Raymond, P.A., Dlugokencky, E.J., Houweling, S., Patra, P.K., Ciais, P., Arora, V.K., Bastviken, D., Bergamaschi, P., Blake, D.R., Brailsford, G., Bruhwiler, L., Carlson, K.M., Carrol, M., Castaldi, S., Chandra, N., Crevoisier, C., Crill, P.M., Covey, K., Curry, C.L., Etiope, G., Frankenberg, C., Gedney, N., Hegglin, M., Hoglund-Isaksson, L., Hugelius, G., Ishizawa, M., Ito, A., Janssens-Maenhout, G., Jensen, K.M., Joos, F., Kleinen, T., Krummel, P.B., Langenfelds, R.L., Laruelle, G.G., Liu, L., Machida, T., Maksyutov, S., McDonald, K.C., McNorton, J., Miller, P.A., Melton, J.R., Morino, I., Muller, J., Murguia-Flores, F., Naik, V., Niwa, Y., Noce, S., Doherty, S.O., Parker, R.J., Peng, C., Peng, S., Peters, G.P., Prigent, C., Prinn, R., Ramonet, M., Regnier, P., Riley, W.J., Rosentreter, J.A., Segers, A., Simpson, I.J., Shi, H., Smith, S.J., Steele, L.P., Thornton, B.F., Tian, H., Tohjima, Y., Tubiello, F.N., Tsuruta, A., Viovy, N., Voulgarakis, A., Weber, T.S., van Weele, M., van der Werf, G.R., Weiss, R.F., Worthy, D., Wunch, D., Yin, Y., Yoshida, Y., Zhang, W., Zhang, Z., Zhao, Y., Zheng, B., Zhu, Qing, Zhu, Qiuan, Zhuang, Q., 2020. The Global Methane Budget 2000-2017. Earth Sys. Sci. Data 12, 1561–1623. https://doi.org/10.5194/essd-12-1561-2020

    Schirrmeister, B.E., Gugger, M., Donoghue, P.C.J., 2015. Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils. Palaeontology 58, 769–785. https://doi.org/10.1111/pala.12178

    Singh, B.K., Bardgett, R.D., Smith, P., Reay, D.S., 2010. Microorganisms and climate change: terrestrial feedbacks and mitigation options. Nat. Rev. Microbio. 8, 779–790. https://doi.org/10.1038/nrmicro2439

    Stevens, R.J., Laughlin, R.J., Burns, L.C., Arah, J.R.M., Hood, R.C., 1997. Measuring the contributions of nitrification and denitrification to the flux of nitrous oxide from soil. Soil Bio. & Biochem. 29, 139–151. https://doi.org/10.1016/S0038-0717(96)00303-3

    Stüeken, E.E., Buick, R., 2018. Environmental control on microbial diversification and methane production in the Mesoarchean. Precambrian Res. 304, 64–72. https://doi.org/10.1016/j.precamres.2017.11.003

    Sun, X., Jayakumar, A., Tracey, J.C., Wallace, E., Kelly, C.L., Casciotti, K.L., Ward, B.B., 2021. Microbial N2O consumption in and above marine N2O production hotspots. ISME J. 15, 1434–1444. https://doi.org/10.1038/s41396-020-00861-2

    Thottathil, S.D., Reis, P.C.J., Prairie, Y.T., 2022. Magnitude and Drivers of Oxic Methane Production in Small Temperate Lakes. Environ. Sci. Technol. https://doi.org/10.1021/acs.est.2c01730

    Tian, H., Lu, C., Ciais, P., Michalak, A.M., Canadell, J.G., Saikawa, E., Huntzinger, D.N., Gurney, K.R., Sitch, S., Zhang, B., Yang, J., Bousquet, P., Bruhwiler, L., Chen, G., Dlugokencky, E., Friedlingstein, P., Melillo, J., Pan, S., Poulter, B., Prinn, R., Saunois, M., Schwalm, C.R., Wofsy, S.C., 2016. The terrestrial biosphere as a net source of greenhouse gases to the atmosphere. Nature 531, 225–228. https://doi.org/10.1038/nature16946

    Tian, H., Xu, R., Canadell, J.G., Thompson, R.L., Winiwarter, W., Suntharalingam, P., Davidson, E.A., Ciais, P., Jackson, R.B., Janssens-Maenhout, G., Prather, M.J., Regnier, P., Pan, N., Pan, S., Peters, G.P., Shi, H., Tubiello, F.N., Zaehle, S., Zhou, F., Arneth, A., Battaglia, G., Berthet, S., Bopp, L., Bouwman, A.F., Buitenhuis, E.T., Chang, J., Chipperfield, M.P., Dangal, S.R.S., Dlugokencky, E., Elkins, J.W., Eyre, B.D., Fu, B., Hall, B., Ito, A., Joos, F., Krummel, P.B., Landolfi, A., Laruelle, G.G., Lauerwald, R., Li, W., Lienert, S., Maavara, T., MacLeod, M., Millet, D.B., Olin, S., Patra, P.K., Prinn, R.G., Raymond, P.A., Ruiz, D.J., van der Werf, G.R., Vuichard, N., Wang, J., Weiss, R.F., Wells, K.C., Wilson, C., Yang, J., Yao, Y., 2020. A comprehensive quantification of global nitrous oxide sources and sinks. Nature 586, 248–256. https://doi.org/10.1038/s41586-020-2780-0

    Tiedje, J.M., Sexstone, A.J., Parkin, T.B., Revsbech, N.P., 1984. Anaerobic processes in soil. Plant and Soil 76, 197–212. https://doi.org/10.1007/BF02205580

    Turner, A.J., Frankenberg, C., Kort, E.A., 2019. Interpreting contemporary trends in atmospheric methane. Proc. Natl. Acad. Sci. 116, 2805–2813. https://doi.org/10.1073/pnas.1814297116

    US EPA, 2022. Understanding global warming potentials [WWW Document]. Greenhouse Gas Emissions. URL https://www.epa.gov/ghgemissions/und...ar%20timescale

    Weldeab, S., Schneider, R.R., Yu, J., Kylander-Clark, A., 2022. Evidence for massive methane hydrate destabilization during the penultimate interglacial warming. Proc. Natl. Acad. Sci. 119, e2201871119. https://doi.org/10.1073/pnas.2201871119

    Wrage, N., Velthof, G.L., van Beusichem, M.L., Oenema, O., 2001. Role of nitrifier denitrification in the production of nitrous oxide. Soil Bio. & Biochem. 33, 1723–1732. https://doi.org/10.1016/S0038-0717(01)00096-7

    Yao Mengyin, Henny Cynthia, Maresca Julia A., Kostka J. E., 2016. Freshwater Bacteria Release Methane as a By-Product of Phosphorus Acquisition. Appl. Env. Microbio. 82, 6994–7003. https://doi.org/10.1128/AEM.02399-16

    Zhang, Z., Zimmermann, N.E., Stenke, A., Li, X., Hodson, E.L., Zhu, G., Huang, C., Poulter, B., 2017. Emerging role of wetland methane emissions in driving 21st century climate change. Proc. Natl. Acad. Sci. 114, 9647–9652. https://doi.org/10.1073/pnas.1618765114

    Zhao, F., Wu, Y., Hui, J., Sivakumar, B., Meng, X., Liu, S., 2021. Projected soil organic carbon loss in response to climate warming and soil water content in a loess watershed. Carbon Bal. Manag. 16, 24. https://doi.org/10.1186/s13021-021-00187-2

    Zheng, Y., Harris, D.F., Yu, Z., Fu, Y., Poudel, S., Ledbetter, R.N., Fixen, K.R., Yang, Z.-Y., Boyd, E.S., Lidstrom, M.E., Seefeldt, L.C., Harwood, C.S., 2018. A pathway for biological methane production using bacterial iron-only nitrogenase. Nat. Microbio. 3, 281–286. https://doi.org/10.1038/s41564-017-0091-5


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