# Advances in Omics

- Institution: IISER Bhopal
- Department: Biotechnology
- Teacher: Prof. Nagarjun Vijay
- Level: Graduate
- Language: English
- Subjects: Biology
- Source: [NPTEL](https://nptel.ac.in/courses/102106456)
- Licence: [CC BY-NC-SA](https://nptel.ac.in/faq) (Non-commercial use only.)
- Syllabus: [at the source](https://nptel.ac.in/courses/102106456)
- Who can watch: Teens profiles and older (sources give no ratings; placed by Invisible Network from the source's own words)

The course begins with a historical perspective to genomics and how the human genome project catalyzed the development of Next-Generation sequencing technologies. Instead of following a standard textbook format of chapters, the course is designed to use the latest articles in leading journals to keep the course focused on the recent advances in the field. However, the course is well grounded in the basics and exposes the students to practical NGS data analysis. In contrast to traditional course on genomics and proteomics, this course has a strong evolutionary flavor.

Intended audience: BE/ME/MS/BSc/MSc/PhD

Prerequisites: Basics of biological molecules

## Lectures

1. [Introduction to Genomics - 1](https://invisiblenetwork.ai/learn/nptel/102106456/089101118e15) (YouTube)
2. [Introduction to Genomics - 2](https://invisiblenetwork.ai/learn/nptel/102106456/65d42dfcdfc3) (YouTube)
3. [Advent of NGS](https://invisiblenetwork.ai/learn/nptel/102106456/ca7da4a47b66) (YouTube)
4. [Genome Assembly: Few Concepts and Terminology](https://invisiblenetwork.ai/learn/nptel/102106456/ef5baf700dcc) (YouTube)
5. [Genome Assembly Approaches](https://invisiblenetwork.ai/learn/nptel/102106456/c59cb15d5325) (YouTube)
6. [Pyrosequencing](https://invisiblenetwork.ai/learn/nptel/102106456/473fb4e03ccf) (YouTube)
7. [Reversible Chain Termination Based Sequencing](https://invisiblenetwork.ai/learn/nptel/102106456/3bfccb23af08) (YouTube)
8. [Ph Sequencing](https://invisiblenetwork.ai/learn/nptel/102106456/6b1f0565f7fd) (YouTube)
9. [Sequencing by Ligation (Solid)](https://invisiblenetwork.ai/learn/nptel/102106456/8c45f371fe7f) (YouTube)
10. [Sequencing by Ligation (Complete Genomics)](https://invisiblenetwork.ai/learn/nptel/102106456/9ed78e1a5c88) (YouTube)
11. [Other Short-Read Sequencing Technologies - Part-1](https://invisiblenetwork.ai/learn/nptel/102106456/09355f4c5845) (YouTube)
12. [Other Short-Read Sequencing Technologies - Part-2](https://invisiblenetwork.ai/learn/nptel/102106456/bd2624636661) (YouTube)
13. [Long-Read Sequencing](https://invisiblenetwork.ai/learn/nptel/102106456/41e67d5ea03b) (YouTube)
14. [Single Molecule Long-Read Sequencing](https://invisiblenetwork.ai/learn/nptel/102106456/553f6c422b6e) (YouTube)
15. [The Omics Data Avalanche](https://invisiblenetwork.ai/learn/nptel/102106456/39e2fe9ff129) (YouTube)
16. [Evolutionary Biology & Genomics](https://invisiblenetwork.ai/learn/nptel/102106456/95ab52ab8f87) (YouTube)
17. [Ancient Genomics](https://invisiblenetwork.ai/learn/nptel/102106456/af217fc79fb6) (YouTube)
18. [Whole-Genome Duplication](https://invisiblenetwork.ai/learn/nptel/102106456/98fa7d6cb6c9) (YouTube)
19. [Tests of Selection](https://invisiblenetwork.ai/learn/nptel/102106456/030d34fd6482) (YouTube)
20. [Genomics in Experimental Evolution](https://invisiblenetwork.ai/learn/nptel/102106456/9a72be48d2c5) (YouTube)
21. [Making Sense of Genomic Sequences](https://invisiblenetwork.ai/learn/nptel/102106456/ae0d6450a88d) (YouTube)
22. [Transcriptomics: New Tools Leading to Deeper Insights](https://invisiblenetwork.ai/learn/nptel/102106456/703fc38e266b) (YouTube)
23. [Single Cell Transcriptomics and Beyond](https://invisiblenetwork.ai/learn/nptel/102106456/b9b4b8853c04) (YouTube)
24. [Proteomics: A Brief Introduction](https://invisiblenetwork.ai/learn/nptel/102106456/7b5ffcad6b92) (YouTube)
25. [Protein Quantification](https://invisiblenetwork.ai/learn/nptel/102106456/e5446dd5dbe3) (YouTube)
26. [Introduction to Linux for Omics](https://invisiblenetwork.ai/learn/nptel/102106456/608bcf530622) (YouTube)
27. [The Linux Command Line Interface](https://invisiblenetwork.ai/learn/nptel/102106456/03df14122477) (YouTube)
28. [Using the CLI-1:NCBI Datasets](https://invisiblenetwork.ai/learn/nptel/102106456/337ff2bc64b4) (YouTube)
29. [Using the CLI-2: Short Read Archive Toolkit](https://invisiblenetwork.ai/learn/nptel/102106456/a8e7ff7f6ff7) (YouTube)
30. [UCSC and IGV genome browsers](https://invisiblenetwork.ai/learn/nptel/102106456/ac51082015f5) (YouTube)
31. [Mega Omics Projects](https://invisiblenetwork.ai/learn/nptel/102106456/b657a25bab24) (YouTube)
32. [Genotype-Tissue Expression (GTEx)](https://invisiblenetwork.ai/learn/nptel/102106456/25b4d743ede1) (YouTube)
33. [Encyclopedia of DNA Element (ENCODE)](https://invisiblenetwork.ai/learn/nptel/102106456/c45c5918c948) (YouTube)
34. [The Cancer Genome Atlas (TCGA)](https://invisiblenetwork.ai/learn/nptel/102106456/a5951bb9b577) (YouTube)
35. [Eukaryotic Genome Sequencing Consortia](https://invisiblenetwork.ai/learn/nptel/102106456/3426c64de60a) (YouTube)
36. [The Postomics Era](https://invisiblenetwork.ai/learn/nptel/102106456/edee2aae9ff9) (YouTube)
37. [RNA-Seq Differential Expression Analysis](https://invisiblenetwork.ai/learn/nptel/102106456/1f5dd0068e1a) (YouTube)
38. [Gene Loss & its Consequences](https://invisiblenetwork.ai/learn/nptel/102106456/cc3b09b8a552) (YouTube)
39. [Establishing Gene loss: Few Examples](https://invisiblenetwork.ai/learn/nptel/102106456/adae7660e2a1) (YouTube)
40. [Course Summary](https://invisiblenetwork.ai/learn/nptel/102106456/465863fcc3bb) (YouTube)