# Computational Genomics

- Institution: IISER Bhopal
- Department: Biotechnology
- Teacher: Prof. Vineet Kumar Sharma
- Level: Undergraduate
- Language: English
- Subjects: Biology
- Source: [NPTEL](https://nptel.ac.in/courses/102106339)
- Licence: [CC BY-NC-SA](https://nptel.ac.in/faq) (Non-commercial use only.)
- Syllabus: [at the source](https://nptel.ac.in/courses/102106339)
- Who can watch: Teens profiles and older (sources give no ratings; placed by Invisible Network from the source's own words)

## Lectures

1. [Introduction to Different OMICS Approaches and their Applications](https://invisiblenetwork.ai/learn/nptel/102106339/e71d14218898) (Video)
2. [Genetic Information in Prokaryotic](https://invisiblenetwork.ai/learn/nptel/102106339/6a7d709670c9) (Video)
3. [Databases and Web Resources to Store and Access the Biological Data](https://invisiblenetwork.ai/learn/nptel/102106339/787fce319b04) (Video)
4. [First and Second Generation Sequencing Technologies](https://invisiblenetwork.ai/learn/nptel/102106339/4f4ca6cfb733) (Video)
5. [Long Read Sequencing and Linked Read Sequencing - Part 01](https://invisiblenetwork.ai/learn/nptel/102106339/e7f24878a704) (Video)
6. [Long Read Sequencing and Linked Read Sequencing - Part 02](https://invisiblenetwork.ai/learn/nptel/102106339/3bc509d6a582) (Video)
7. [Sequence Formats and Databases for Genomic Analysis](https://invisiblenetwork.ai/learn/nptel/102106339/9c2a50a86e64) (Video)
8. [Introduction to Linux](https://invisiblenetwork.ai/learn/nptel/102106339/efc896f0c79c) (Video)
9. [File Handling and Remote Connectivity in Linux](https://invisiblenetwork.ai/learn/nptel/102106339/5460a16d478a) (Video)
10. [Running Linux Commands and Installation of Genomic Packages](https://invisiblenetwork.ai/learn/nptel/102106339/d7ed32021eed) (Video)
11. [Introduction to R and Applications in Genomic Analysis](https://invisiblenetwork.ai/learn/nptel/102106339/13c3941cc422) (Video)
12. [Publicly Available Tools and Need for Workstations for Genomic Analysis](https://invisiblenetwork.ai/learn/nptel/102106339/ccfc546b93bc) (Video)
13. [Overview of Genomic and Transcriptomic Analysis](https://invisiblenetwork.ai/learn/nptel/102106339/73e9dfb344ef) (Video)
14. [Genomic and Transcriptomic Analysis of an Organism with Case Studies](https://invisiblenetwork.ai/learn/nptel/102106339/bef768a34954) (Video)
15. [How to Collect & Confirm Sample of the Species to be Sequenced & Transcriptome Sequencing Approaches](https://invisiblenetwork.ai/learn/nptel/102106339/3b5962d95716) (Video)
16. [Estimating the Amount of Sequencing Coverage for a Genome and Hybrid Sequencing Approaches](https://invisiblenetwork.ai/learn/nptel/102106339/3054d7921980) (Video)
17. [Types of Reads, Quality Filtering, Estimating the Genome Complexity and Heterozygosity](https://invisiblenetwork.ai/learn/nptel/102106339/8d3e1bd3380b) (Video)
18. [Genome Assembly and its Completion Status, Assembly Algorithms](https://invisiblenetwork.ai/learn/nptel/102106339/95682d4f891f) (Video)
19. [Commonly Used Assembly Tools](https://invisiblenetwork.ai/learn/nptel/102106339/5b4b96264ec6) (Video)
20. [Linked-Read Sequencing and Processing](https://invisiblenetwork.ai/learn/nptel/102106339/a2b6d9a70a7a) (Video)
21. [Long Reads Analysis and Assembly Workflow](https://invisiblenetwork.ai/learn/nptel/102106339/7283a33c7a08) (Video)
22. [De novo Assembly Using Genomic and Transcriptomic Reads](https://invisiblenetwork.ai/learn/nptel/102106339/34389011d723) (Video)
23. [Merging Assemblies to Create Hybrid Assembly and Determining the Quality of Assembly](https://invisiblenetwork.ai/learn/nptel/102106339/d4a507ceb343) (Video)
24. [Chromosomal Level Assembly and Case Studies](https://invisiblenetwork.ai/learn/nptel/102106339/b82775ad21a6) (Video)
25. [Identification and Annotation of Repeats in Genomes](https://invisiblenetwork.ai/learn/nptel/102106339/2f3805688ced) (Video)
26. [De novo Transcriptome Assembly and Making the Coding Gene Set](https://invisiblenetwork.ai/learn/nptel/102106339/409bf0ca60a3) (Video)
27. [Prediction of tRNA, rRNA and miRNA in a Genome](https://invisiblenetwork.ai/learn/nptel/102106339/09d4974fd0db) (Video)
28. [Functional Annotation and Identification of Metabolic Pathways in a Genome](https://invisiblenetwork.ai/learn/nptel/102106339/bfb0a672e907) (Video)
29. [Comprehensive Functional Annotation of Predicted Genes in a Genome](https://invisiblenetwork.ai/learn/nptel/102106339/1bf9d4b0d0f8) (Video)
30. [Functional Annotation of Predicted Genes by Alternate Methods](https://invisiblenetwork.ai/learn/nptel/102106339/726156b9d59c) (Video)
31. [Methods and Steps to Perform the Evolutionary Analysis of a Genome](https://invisiblenetwork.ai/learn/nptel/102106339/d679d9161854) (Video)
32. [Methods for Taxonomic Classification and Phylogeny Econstruction and Analysis](https://invisiblenetwork.ai/learn/nptel/102106339/c2c54f321a5e) (Video)
33. [Epigenetics, ChIp-seq, Transcriptome and Microarrays for Regulation of Expression](https://invisiblenetwork.ai/learn/nptel/102106339/ccbe145d6af5) (Video)
34. [Single Cell Genomics, 10X Chromium Linked-reads and Illumina Sequencing, Single Cell Gene Expression](https://invisiblenetwork.ai/learn/nptel/102106339/aad5481e731a) (Video)
35. [Application of Multiomics Approaches in Human Health and Diseases Such as Cancer, Diabetes, etc.](https://invisiblenetwork.ai/learn/nptel/102106339/91c2070947ae) (Video)
36. [Prokaryotic Genome Sequencing and Assembly Approaches](https://invisiblenetwork.ai/learn/nptel/102106339/832790f54966) (Video)
37. [Gene Prediction Approaches and Common Methods for Bacterial Gene Prediction](https://invisiblenetwork.ai/learn/nptel/102106339/5481d81696ab) (Video)
38. [Common Methods for Annotation of a Bacterial Genome, t-RNA, rRNA, Operon Prediction and Annotation](https://invisiblenetwork.ai/learn/nptel/102106339/1a66d05064f0) (Video)
39. [Phylogenetic Analysis of Bacterial Genomes](https://invisiblenetwork.ai/learn/nptel/102106339/b923553fe768) (Video)
40. [Metabolic and Comparative Analysis](https://invisiblenetwork.ai/learn/nptel/102106339/562c7faa2dd9) (Video)
41. [Microbiome and Metagenome, Human, Organismal and Environmental Microbiomes](https://invisiblenetwork.ai/learn/nptel/102106339/bfc0ca06135c) (Video)
42. [Sequencing and Assembly of Metagenomes, Gene Prediction, Annotation, MAGs (Part 1)](https://invisiblenetwork.ai/learn/nptel/102106339/09631523768d) (Video)
43. [Sequencing and Assembly of Metagenomes, Gene Prediction, Annotation, MAGs (Part 2)](https://invisiblenetwork.ai/learn/nptel/102106339/4c15b51ca945) (Video)
44. [Taxonomic Analysis Using Amplicon Sequence Variants, Statistical Analysis](https://invisiblenetwork.ai/learn/nptel/102106339/641a7171f30f) (Video)
45. [Live Session 10-02-2024](https://invisiblenetwork.ai/learn/nptel/102106339/e71d14218898-2) (Video)
46. [Live Session 17-02-2024](https://invisiblenetwork.ai/learn/nptel/102106339/6a7d709670c9-2) (Video)
47. [Live Session 24-02-2024](https://invisiblenetwork.ai/learn/nptel/102106339/787fce319b04-2) (Video)
48. [Live Session 02-03-2024](https://invisiblenetwork.ai/learn/nptel/102106339/4f4ca6cfb733-2) (Video)
49. [Live Session 09-03-2024](https://invisiblenetwork.ai/learn/nptel/102106339/e7f24878a704-2) (Video)
50. [Live Session 16-03-2024](https://invisiblenetwork.ai/learn/nptel/102106339/3bc509d6a582-2) (Video)
51. [Live Session 30-03-2024](https://invisiblenetwork.ai/learn/nptel/102106339/9c2a50a86e64-2) (Video)
52. [Live Session 06-04-2024](https://invisiblenetwork.ai/learn/nptel/102106339/efc896f0c79c-2) (Video)
53. [Live Session 13-04-2024](https://invisiblenetwork.ai/learn/nptel/102106339/5460a16d478a-2) (Video)