# Computational Systems Biology

- Institution: IIT Madras
- Department: Biotechnology
- Teacher: Prof. Karthik Raman
- Level: Undergraduate
- Language: English
- Subjects: Biology
- Source: [NPTEL](https://nptel.ac.in/courses/102106068)
- Licence: [CC BY-NC-SA](https://nptel.ac.in/faq) (Non-commercial use only.)
- Syllabus: [at the source](https://nptel.ac.in/courses/102106068)
- Who can watch: Teens profiles and older (sources give no ratings; placed by Invisible Network from the source's own words)

## Lectures

1. [01 - Introduction](https://invisiblenetwork.ai/learn/nptel/102106068/6483ed274254) (Video)
2. [02 - Introduction to Modelling](https://invisiblenetwork.ai/learn/nptel/102106068/c69fe6e21ea4) (Video)
3. [03 - Introduction to Modelling](https://invisiblenetwork.ai/learn/nptel/102106068/e12973cee90a) (Video)
4. [04 - Fundamentals of Mathematical Modelling](https://invisiblenetwork.ai/learn/nptel/102106068/c5d5d3abc908) (Video)
5. [05 - Fundamentals of Mathematical Modelling](https://invisiblenetwork.ai/learn/nptel/102106068/9daadf3cbc17) (Video)
6. [06 - Fundamentals of Mathematical Modelling](https://invisiblenetwork.ai/learn/nptel/102106068/11821fdfce16) (Video)
7. [07 - Some Example Models](https://invisiblenetwork.ai/learn/nptel/102106068/71051a2b7cd5) (Video)
8. [08 - Representation of Biological Networks](https://invisiblenetwork.ai/learn/nptel/102106068/782ccf8cf1d2) (Video)
9. [09 - Lab: MATLAB Basics](https://invisiblenetwork.ai/learn/nptel/102106068/15f8ac92ded4) (Video)
10. [10 - Lab: MATLAB Basics](https://invisiblenetwork.ai/learn/nptel/102106068/56b8c378f9d4) (Video)
11. [11 - Lab: MATLAB Basics](https://invisiblenetwork.ai/learn/nptel/102106068/fe8afdd0bac3) (Video)
12. [12 - Lab: MATLAB Basics](https://invisiblenetwork.ai/learn/nptel/102106068/0b12322af282) (Video)
13. [13 - Introduction to Networks](https://invisiblenetwork.ai/learn/nptel/102106068/55da88e5d210) (Video)
14. [14 - Introduction to Networks](https://invisiblenetwork.ai/learn/nptel/102106068/67191dc282f5) (Video)
15. [15 - Introduction to Network Biology](https://invisiblenetwork.ai/learn/nptel/102106068/572a2e410553) (Video)
16. [16 - Introduction to Network Biology](https://invisiblenetwork.ai/learn/nptel/102106068/28f3df846059) (Video)
17. [17 - Introduction to Network Biology](https://invisiblenetwork.ai/learn/nptel/102106068/efe249f4c849) (Video)
18. [18 - Network Biology](https://invisiblenetwork.ai/learn/nptel/102106068/c976ad9caf4a) (Video)
19. [19 - Network Models](https://invisiblenetwork.ai/learn/nptel/102106068/ae0b4a0b1caf) (Video)
20. [20 - Network Models](https://invisiblenetwork.ai/learn/nptel/102106068/df398df8d8e9) (Video)
21. [21 - Biological Networks](https://invisiblenetwork.ai/learn/nptel/102106068/111a917104ea) (Video)
22. [22 - Network Perturbations](https://invisiblenetwork.ai/learn/nptel/102106068/85df5ec480cd) (Video)
23. [23 - Community Detection](https://invisiblenetwork.ai/learn/nptel/102106068/1d307c299702) (Video)
24. [24 - Network Motifs](https://invisiblenetwork.ai/learn/nptel/102106068/05b2fd372af4) (Video)
25. [25 - Lab: Cytoscape](https://invisiblenetwork.ai/learn/nptel/102106068/b97bbff66ba8) (Video)
26. [26 - Lab: Cytoscape](https://invisiblenetwork.ai/learn/nptel/102106068/1985a9730d6a) (Video)
27. [27 - Lab: Network Biology](https://invisiblenetwork.ai/learn/nptel/102106068/21219cbbf89d) (Video)
28. [28 - Network Biology: Recap](https://invisiblenetwork.ai/learn/nptel/102106068/27f8871d4307) (Video)
29. [29 - Lab: Network Models & Perturbations](https://invisiblenetwork.ai/learn/nptel/102106068/4e5caef47a44) (Video)
30. [30 - Lab: Network Models & Perturbations](https://invisiblenetwork.ai/learn/nptel/102106068/03bde6a3dbac) (Video)
31. [31 - Reconstruction of Gene Regulatory Networks](https://invisiblenetwork.ai/learn/nptel/102106068/80efd33848c5) (Video)
32. [32 - Reconstruction of Protein Networks](https://invisiblenetwork.ai/learn/nptel/102106068/df07e13a8b38) (Video)
33. [33 - Reconstruction of Signalling Networks](https://invisiblenetwork.ai/learn/nptel/102106068/ee9167b6a09f) (Video)
34. [34 - Reconstruction of Signalling Networks](https://invisiblenetwork.ai/learn/nptel/102106068/8820cad8be24) (Video)
35. [35 - Introduction to Dynamic Modelling](https://invisiblenetwork.ai/learn/nptel/102106068/cbdea2574a74) (Video)
36. [36 - Introduction to Dynamic Modelling](https://invisiblenetwork.ai/learn/nptel/102106068/9880c9a11b55) (Video)
37. [37 - Introduction to Dynamic Modelling](https://invisiblenetwork.ai/learn/nptel/102106068/c7009a8b1eec) (Video)
38. [38 - Lab: Solving ODEs in MATLAB](https://invisiblenetwork.ai/learn/nptel/102106068/22433db83fb6) (Video)
39. [39 - Lab: Example Biological Model](https://invisiblenetwork.ai/learn/nptel/102106068/11105b5beac2) (Video)
40. [40 - Parameter Estimation](https://invisiblenetwork.ai/learn/nptel/102106068/e9fc78c80d03) (Video)
41. [41 - Parameter Estimation](https://invisiblenetwork.ai/learn/nptel/102106068/c2db3e35e333) (Video)
42. [42 - Parameter Estimation](https://invisiblenetwork.ai/learn/nptel/102106068/b22bcb0b5192) (Video)
43. [43 - Methods for Parameter Estimation](https://invisiblenetwork.ai/learn/nptel/102106068/7c36ad7bfc9e) (Video)
44. [44 - Direct Search Methods](https://invisiblenetwork.ai/learn/nptel/102106068/d00dc20cffde) (Video)
45. [45 - Genetic Algorithms](https://invisiblenetwork.ai/learn/nptel/102106068/c726ef6d3cb5) (Video)
46. [46 - Genetic Algorithms](https://invisiblenetwork.ai/learn/nptel/102106068/330c70d4864d) (Video)
47. [47 - Other Evolutionary Algorithms](https://invisiblenetwork.ai/learn/nptel/102106068/4aa538613947) (Video)
48. [48 - PyGMO](https://invisiblenetwork.ai/learn/nptel/102106068/aa7d4d2c2d50) (Video)
49. [49 - Dynamic Modelling Recap](https://invisiblenetwork.ai/learn/nptel/102106068/c6ff6c571b90) (Video)
50. [50 - Lab: Parameter Estimation](https://invisiblenetwork.ai/learn/nptel/102106068/dcbcf4aafcb5) (Video)
51. [51 - Guest Lecture: Modelling in Drug Development](https://invisiblenetwork.ai/learn/nptel/102106068/522a0c248c8d) (Video)
52. [52 - Guest Lecture: Modelling in Drug Development](https://invisiblenetwork.ai/learn/nptel/102106068/2310d289b283) (Video)
53. [53 - Guest Lecture: Quantitative Systems Pharmacology](https://invisiblenetwork.ai/learn/nptel/102106068/3bc64812cd27) (Video)
54. [54 - Guest Lecture: Quantitative Systems Pharmacology](https://invisiblenetwork.ai/learn/nptel/102106068/05f9d6bcca8d) (Video)
55. [55 - Guest Lecture: Quantitative Systems Pharmacology](https://invisiblenetwork.ai/learn/nptel/102106068/e540583e0376) (Video)
56. [56 - Constraint-based Modelling of Metabolic Networks](https://invisiblenetwork.ai/learn/nptel/102106068/9b50c6f46dc5) (Video)
57. [57 - Flux Balance Analysis](https://invisiblenetwork.ai/learn/nptel/102106068/a670fbea653b) (Video)
58. [58 - Flux Balance Analysis](https://invisiblenetwork.ai/learn/nptel/102106068/8bc0c63080ed) (Video)
59. [59 - Flux Balance Analysis](https://invisiblenetwork.ai/learn/nptel/102106068/37257ec72402) (Video)
60. [60 - Other Constraint-Based Approaches](https://invisiblenetwork.ai/learn/nptel/102106068/72aac9121a11) (Video)
61. [61 - Other Constraint-Based Approaches](https://invisiblenetwork.ai/learn/nptel/102106068/b1ba47ee2030) (Video)
62. [62 - Lab: FBA using MATLAB](https://invisiblenetwork.ai/learn/nptel/102106068/60c5d1f3d61b) (Video)
63. [63 - Perturbations to Metabolic Networks: Deletions](https://invisiblenetwork.ai/learn/nptel/102106068/bea9a38f5ac3) (Video)
64. [64 - Lab: COBRA Toolbox](https://invisiblenetwork.ai/learn/nptel/102106068/b218a7f9dedf) (Video)
65. [65 - Understanding FBA](https://invisiblenetwork.ai/learn/nptel/102106068/3e9e507616db) (Video)
66. [66 - Understanding FBA](https://invisiblenetwork.ai/learn/nptel/102106068/abd25d746c52) (Video)
67. [67 - Perturbations to Metabolic Networks: Over-expression](https://invisiblenetwork.ai/learn/nptel/102106068/c6f81bd40322) (Video)
68. [68 - Perturbations to Metabolic Networks: Synthetic Lethals](https://invisiblenetwork.ai/learn/nptel/102106068/878ab70a7c2b) (Video)
69. [69 - Perturbations to Metabolic Networks: Synthetic Lethals](https://invisiblenetwork.ai/learn/nptel/102106068/8738001b3083) (Video)
70. [70 - Constraint-based Modelling of Metabolic Networks](https://invisiblenetwork.ai/learn/nptel/102106068/4887a4134b5a) (Video)
71. [71 - Lab: Gene Deletions](https://invisiblenetwork.ai/learn/nptel/102106068/73ea5077a0e1) (Video)
72. [72 -Integrating Regulatory Information into Constraint-Based Models](https://invisiblenetwork.ai/learn/nptel/102106068/8b356a7a9869) (Video)
73. [73 - Elementary Modes](https://invisiblenetwork.ai/learn/nptel/102106068/669378fc6fb2) (Video)
74. [74 - Elementary Modes](https://invisiblenetwork.ai/learn/nptel/102106068/632c1f0d34e9) (Video)
75. [75 -Constraint-based Modelling of Metabolic Networks: Applications](https://invisiblenetwork.ai/learn/nptel/102106068/f062ce06c76e) (Video)
76. [76 - Constraint-based Modelling of Metabolic Networks: Applications](https://invisiblenetwork.ai/learn/nptel/102106068/5e5f1a010c45) (Video)
77. [77 - Constraint-based Modelling of Metabolic Networks: Applications](https://invisiblenetwork.ai/learn/nptel/102106068/9203a1ffc0af) (Video)
78. [78 - Lab: Gene Deletions](https://invisiblenetwork.ai/learn/nptel/102106068/3f2d661fb967) (Video)
79. [79 - Constraint-based Modelling of Metabolic Networks: Recap](https://invisiblenetwork.ai/learn/nptel/102106068/fe954a87e8ad) (Video)
80. [80 - Constraint-based Modelling of Metabolic Networks: Recap](https://invisiblenetwork.ai/learn/nptel/102106068/f84864d970e5) (Video)
81. [81 - Constraint-based Modelling of Metabolic Networks: Recap](https://invisiblenetwork.ai/learn/nptel/102106068/d76dea9c0c66) (Video)
82. [82 - $^{13}$C-Metabolic Flux Analysis using Mass Spectrometry](https://invisiblenetwork.ai/learn/nptel/102106068/348ad888484b) (Video)
83. [83 - $^{13}$C-Metabolic Flux Analysis using Mass Spectrometry](https://invisiblenetwork.ai/learn/nptel/102106068/c298adbcc381) (Video)
84. [84 - $^{13}$C-Metabolic Flux Analysis using Mass Spectrometry](https://invisiblenetwork.ai/learn/nptel/102106068/e4e3b0e13a94) (Video)
85. [85 - Lab: $^{13}$C-Metabolic Flux Analysis using Mass Spectrometry](https://invisiblenetwork.ai/learn/nptel/102106068/a2d95787bb40) (Video)
86. [86 - Modelling Gene Regulatory Networks](https://invisiblenetwork.ai/learn/nptel/102106068/0dccab2b7c1d) (Video)
87. [87 - Modelling Gene Regulatory Networks](https://invisiblenetwork.ai/learn/nptel/102106068/63dd626eb7c8) (Video)
88. [88 - Modelling Gene Regulatory Networks](https://invisiblenetwork.ai/learn/nptel/102106068/7e983601a83a) (Video)
89. [89 - Lab: Modelling Gene Regulatory Networks](https://invisiblenetwork.ai/learn/nptel/102106068/2e6b25954439) (Video)
90. [90 - Lab: Modelling Gene Regulatory Networks](https://invisiblenetwork.ai/learn/nptel/102106068/d9a783cda00f) (Video)
91. [91 - Computational Modelling of Host--Pathogen Interactions](https://invisiblenetwork.ai/learn/nptel/102106068/6be965816552) (Video)
92. [92 - Computational Modelling of Host--Pathogen Interactions](https://invisiblenetwork.ai/learn/nptel/102106068/3d876f22346b) (Video)
93. [93 - Robustness in Biological Systems](https://invisiblenetwork.ai/learn/nptel/102106068/9a8aac7e933e) (Video)
94. [94 - Robustness in Biological Systems: Mechanisms](https://invisiblenetwork.ai/learn/nptel/102106068/903efba0156c) (Video)
95. [95 - Robustness in Biological Systems: Organising Principles](https://invisiblenetwork.ai/learn/nptel/102106068/e4505bb6d18e) (Video)
96. [96 - Robustness in Biological Systems: Trade-offs](https://invisiblenetwork.ai/learn/nptel/102106068/09761d8c6fe1) (Video)
97. [97 - Obustness and Evolvability](https://invisiblenetwork.ai/learn/nptel/102106068/7517b925b5b3) (Video)
98. [98 - obustness and Evolvability](https://invisiblenetwork.ai/learn/nptel/102106068/59281f82a59a) (Video)
99. [99 - Introduction to Synthetic Biology](https://invisiblenetwork.ai/learn/nptel/102106068/be2f2ae35d2e) (Video)
100. [100 - Advanced Topics](https://invisiblenetwork.ai/learn/nptel/102106068/cd4c94e04130) (Video)
101. [101 - Advanced Topics](https://invisiblenetwork.ai/learn/nptel/102106068/c1a13626fa96) (Video)
102. [102 - Advanced Topics](https://invisiblenetwork.ai/learn/nptel/102106068/91e3ee915c80) (Video)
103. [103 - Course Recap](https://invisiblenetwork.ai/learn/nptel/102106068/97ef4cce0795) (Video)
104. [Live Session 05-03-2021](https://invisiblenetwork.ai/learn/nptel/102106068/6483ed274254-2) (Video)
105. [Live Session 20-02-2020](https://invisiblenetwork.ai/learn/nptel/102106068/c69fe6e21ea4-2) (Video)